Browse Element(s) Details


Os.50810.2.S1_at

Description gb:AK105252.1
DB_XREF= gi:32990461
TID=Os.50810.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D01, full insert sequence.
FL= gb:AK105252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0228011/11F-box domain containing protein, expressed
LOC_Os04g022641/11retrotransposon protein, putative, unclassified
LOC_Os03g343201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02230OsAffx.8341.1.S1_at1/114+754808..761293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02230OsAffx.20940.1.S1_at1/114+754808..761293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02240OsAffx.3700.1.S1_x_at11/114+765319..768315hypothetical protein
LOC_Os04g02240OsAffx.3700.1.S1_at11/114+765319..768315hypothetical protein
LOC_Os04g02240OsAffx.3761.1.S1_x_at1/114+765319..768315hypothetical protein
LOC_Os04g02250NANA4+769338..772899retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.28472.1.S1_x_at11/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.8747.3.S1_x_at2/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.50810.2.S1_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.31730.1.S1_x_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02280Os.50810.2.S1_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280Os.50810.1.S1_x_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.28472.1.S1_x_at10/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.31730.1.S1_x_at1/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02300OsAffx.3903.1.S1_at1/114+790445..794050retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02310OsAffx.21315.1.S1_at1/114+795536..802082retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02320NANA4+803276..804712retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02330OsAffx.10633.1.S1_at7/114+805173..807551retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g02340Os.40855.4.S1_x_at7/114+811462..813563hypothetical protein
LOC_Os04g02340Os.40855.2.S1_x_at7/114+811462..813563hypothetical protein
LOC_Os04g02340Os.40360.1.S1_x_at1/114+811462..813563hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50810.2.S1_at--583--5651Chr04:785231..785255 (25 bp)
GACAGGTTTGAATGGGACTCAGACA
LOC_Os04g02280
Os.50810.2.S1_at--1111--6151Chr04:785078..785102 (25 bp)
GAGGTTATCTTCTTGAGTGATTCGT
LOC_Os04g02280
Os.50810.2.S1_at--788--5951Chr04:785052..785076 (25 bp)
GAGAAGAGGATTGGCCTACCACTTA
LOC_Os04g02280
Os.50810.2.S1_at--556--10871Chr04:785042..785066 (25 bp)
TTGGCCTACCACTTAAATAGCTCAA
LOC_Os04g02280
Os.50810.2.S1_at--159--5051Chr04:785002..785026 (25 bp)
GCAGCCTCCGTCCAACAAATTATGG
LOC_Os04g02280
Os.50810.2.S1_at--676--6131Chr04:784973..784997 (25 bp)
GAGGTGGGCATTCAGCCATTTATAC
LOC_Os04g02280
Os.50810.2.S1_at--774--6811Chr04:784944..784968 (25 bp)
GTTTTTTCCATACTCACCTTGGATG
LOC_Os04g02280
Os.50810.2.S1_at--461--6251Chr04:784923..784947 (25 bp)
GATGGGACGGTTTCCAGAAGACAAT
LOC_Os04g02280
Os.50810.2.S1_at--431--82322Chr12:13995530..13995554 (25 bp)
GGCAACCATGTAAAATCCCCTGTAA
NONE
Os.50810.2.S1_at--790--2631Chr04:784158..784182 (25 bp)
AACCTAGAAGGTGTAAGCCTGTGCT
LOC_Os04g02280
Os.50810.2.S1_at--684--3091Chr04:784124..784148 (25 bp)
AATAGACCCACAGGGCCATGTAGTG
LOC_Os04g02280
Target Sequence 
GACAGGTTTGAATGGGACTCAGACAATGATAATGTTATTGAGACCAACAGCAGGGGATCTGGTGGTTATATTAATTTTCT
TGTTGACACTACAAGGAGGGGCAGATATAACTCTGGTGGTTATATTGATTTTCTTGGATTTCACCCTTACAAGGAGGTTA
TCTTCTTGAGTGATTCGTTGAGAAGAGGATTGGCCTACCACTTAAATAGCTCAAAGATTCAAGACTTGGGCAGCCTCCGT
CCAACAAATTATGGAACAGAGGTGGGCATTCAGCCATTTATACAAAAGTTTTTTCCATACTCACCTTGGATGGGACGGTT
TCCAGAAGACAATTAATTTCATCTGGAAGATTACGATGTATTGCATATATGCAAATGACACTGCGTACCCATGTAAATGT
CCCTTTTATAAGGGCAACCATGTAAAATCCCCTGTAAACCTAAACCTAGAAGGTGTAAGCCTGTGCTAAGGCTATAAATA
GACCCACAGGGCCATGTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50810.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis