Browse Element(s) Details


OsAffx.3700.1.S1_x_at

Description tigr:9632.m00129
TID=OsAffx.3700.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0224011/11hypothetical protein
LOC_Os05g081302/11hypothetical protein
LOC_Os08g084501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02200OsAffx.198.1.S1_at1/114+746214..749126retrotransposon protein, putative, unclassified
LOC_Os04g02210NANA4+749446..750225retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02220Os.46314.2.S1_x_at7/114+752381..754680retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02220Os.47114.1.S1_x_at1/114+752381..754680retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02220OsAffx.32036.1.S1_at1/114+752381..754680retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02230OsAffx.8341.1.S1_at1/114+754808..761293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02230OsAffx.20940.1.S1_at1/114+754808..761293retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02240OsAffx.3700.1.S1_x_at11/114+765319..768315hypothetical protein
LOC_Os04g02240OsAffx.3700.1.S1_at11/114+765319..768315hypothetical protein
LOC_Os04g02240OsAffx.3761.1.S1_x_at1/114+765319..768315hypothetical protein
LOC_Os04g02250NANA4+769338..772899retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.28472.1.S1_x_at11/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.8747.3.S1_x_at2/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264Os.50810.2.S1_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02264OsAffx.31730.1.S1_x_at1/114+776292..780770retrotransposon protein, putative, unclassified
LOC_Os04g02280Os.50810.2.S1_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280Os.50810.1.S1_x_at11/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.28472.1.S1_x_at10/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02280OsAffx.31730.1.S1_x_at1/114+784078..789850F-box domain containing protein, expressed
LOC_Os04g02300OsAffx.3903.1.S1_at1/114+790445..794050retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3700.1.S1_x_at--193--4711Chr04:767661..767685 (25 bp)
GCGGCCGATGCCAAGTGATCGTACT
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--543--9991Chr04:767906..767930 (25 bp)
TAGCCCCTTTGTCTTATGATGTGAG
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--1155--771Chr04:767924..767948 (25 bp)
ATGTGAGACGGACTCTTGAAGATAT
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--101--9451Chr04:767955..767979 (25 bp)
TCGGCTAAAGGCATCATCATTGGAT
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--1139--3852Chr05:4410259..4410283 (25 bp)
CTGTGGGTCAATCAGGACTAGGCTT
LOC_Os05g08130
OsAffx.3700.1.S1_x_at--1010--10091Chr04:768012..768036 (25 bp)
TAGGCTTCAAGAAATTCAATCTTTG
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--496--9153Chr08:4864943..4864963 (21 bp)
TGCCCTTACTCCAGCGGTTTATCTC
LOC_Os08g08450
OsAffx.3700.1.S1_x_at--313--8131Chr04:768144..768168 (25 bp)
GGACATTGAAGTCACCATCCAAATT
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--301--3291Chr04:768163..768187 (25 bp)
CAAATTAATTGGCAACTCGTGCACG
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--760--9411Chr04:768179..768203 (25 bp)
TCGTGCACGAAGAGGAGTCCAAACT
LOC_Os04g02240
OsAffx.3700.1.S1_x_at--633--6111Chr04:768193..768217 (25 bp)
GAGTCCAAACTCGATCAACTGTCTG
LOC_Os04g02240
Target Sequence 
GCGGCCGATGCCAAGTGATCGTACTCCATCGGCTGCAGGCAGCCACAACATTGAAGAGGAAGAACAACCAGTGGCTCCTG
TCATCCCAGTCTTAGCTGATCTGTTTTCCTTTGACATCAAGGATTACCTTGATGAAACAGAAGAAGACACCACCAGTAAA
GCCATAGCCCCTTTGTCTTATGATGTGAGACGGACTCTTGAAGATATCTCTCATCGGCTAAAGGCATCATCATTGGATAA
CTTGGTGGTCGACTGTGGGTCAATCAGGACTAGGCTTCAAGAAATTCAATCTTTGATCCCAGATGAACTAGCCGATGCCC
TTACTCCAGCGGTTTATCTCGAACAACACCAATTCAAGCGGGAGAAGGCCAAGCAAAGATTAGCCGAACGGGGGGAGCGC
AAGGACATTGAAGTCACCATCCAAATTAATTGGCAACTCGTGCACGAAGAGGAGTCCAAACTCGATCAACTGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3700.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis