Browse Element(s) Details


OsAffx.31730.1.S1_x_at

Description tigr:9640.m01323
TID=OsAffx.31730.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1368011/11hypothetical protein
LOC_Os08g279602/11hypothetical protein
LOC_Os08g296302/11hypothetical protein
LOC_Os04g255101/11hypothetical protein
LOC_Os04g022801/11F-box domain containing protein, expressed
LOC_Os04g022641/11retrotransposon protein, putative, unclassified
LOC_Os12g137001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13670Os.52726.1.S1_at11/1112+7686375..7696616expressed protein
LOC_Os12g13680OsAffx.31730.1.S1_x_at11/1112+7715938..7716552hypothetical protein
LOC_Os12g13680OsAffx.28472.1.S1_x_at10/1112+7715938..7716552hypothetical protein
LOC_Os12g13690NANA12+7717151..7717474hypothetical protein
LOC_Os12g13700OsAffx.31730.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13700OsAffx.28472.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13710NANA12+7725535..7727033hypothetical protein
LOC_Os12g13720OsAffx.31733.1.S1_at11/1112+7729148..7741956PDR-like ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31730.1.S1_x_at--955--9271Chr12:7716444..7716468 (25 bp)
TCCGAATGTAAAGGCATCTTGGGCG
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--504--434Chr12:7716459..7716483 (25 bp)
ATCTTGGGCGAAGGCATCTCGGGCA
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--226--9572Chr12:7716460..7716484 (25 bp)
TCTTGGGCGAAGGCATCTCGGGCAA
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--102--10851Chr12:7716462..7716486 (25 bp)
TTGGGCGAAGGCATCTCGGGCAAAC
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--845--8652Chr12:7716463..7716487 (25 bp)
TGGGCGAAGGCATCTCGGGCAAACT
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--241--8392Chr12:7716465..7716489 (25 bp)
GGCGAAGGCATCTCGGGCAAACTAC
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--498--4592Chr12:7716466..7716490 (25 bp)
GCGAAGGCATCTCGGGCAAACTACA
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--878--5292Chr12:7716468..7716492 (25 bp)
GAAGGCATCTCGGGCAAACTACAAA
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--792--8272Chr12:7716471..7716495 (25 bp)
GGCATCTCGGGCAAACTACAAAGAC
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--84--3731Chr12:7716486..7716510 (25 bp)
CTACAAAGACTTCGTCATGACGAGT
LOC_Os12g13680
OsAffx.31730.1.S1_x_at--183--9418Chr12:7716497..7716521 (25 bp)
TCGTCATGACGAGTTCGGCATCAAG
LOC_Os12g13680
Target Sequence
TCCGAATGTAAAGGCATCTTGGGCGAAGGCATCTCGGGCAAACTACAAAGACTTCGTCATGACGAGTTCGGCATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31730.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis