Browse Element(s) Details


OsAffx.31733.1.S1_at

Description tigr:9640.m01327
TID=OsAffx.31733.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1372011/11PDR-like ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13680OsAffx.31730.1.S1_x_at11/1112+7715938..7716552hypothetical protein
LOC_Os12g13680OsAffx.28472.1.S1_x_at10/1112+7715938..7716552hypothetical protein
LOC_Os12g13690NANA12+7717151..7717474hypothetical protein
LOC_Os12g13700OsAffx.31730.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13700OsAffx.28472.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13710NANA12+7725535..7727033hypothetical protein
LOC_Os12g13720OsAffx.31733.1.S1_at11/1112+7729148..7741956PDR-like ABC transporter, putative, expressed
LOC_Os12g13730Os.5382.1.S1_at11/1112+7745658..7746640expressed protein
LOC_Os12g13740NANA12+7750568..7751384hypothetical protein
LOC_Os12g13750Os.40360.1.S1_at9/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40360.1.S1_x_at5/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40855.5.S1_x_at3/1112+7753330..7755881hypothetical protein
LOC_Os12g13760Os.50029.1.S1_at1/1112+7760843..7761105hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31733.1.S1_at--369--4511Chr12:7730002..7730026 (25 bp)
GCCGTTGAACGCTCTGTCATGTACA
LOC_Os12g13720
OsAffx.31733.1.S1_at--1073--6571Chr12:7729777..7729801 (25 bp)
GATTCCCTATGTTTTGATGCTGGCA
LOC_Os12g13720
OsAffx.31733.1.S1_at--9--6751Chr12:7729747..7729771 (25 bp)
GTTCATGTTGATCGCATACCCGACA
LOC_Os12g13720
OsAffx.31733.1.S1_at--1021--10071Chr12:7729721..7729745 (25 bp)
TAGGGTATGCCTGGACAGCAGCGAA
LOC_Os12g13720
OsAffx.31733.1.S1_at--1112--1631Chr12:7729702..7729726 (25 bp)
AGCGAAGTTCTGCTGGTTCTTTTAC
LOC_Os12g13720
OsAffx.31733.1.S1_at--631--6731Chr12:7729687..7729711 (25 bp)
GTTCTTTTACACCATGTTCTGCACG
LOC_Os12g13720
OsAffx.31733.1.S1_at--856--8451Chr12:7729604..7729628 (25 bp)
TGGCCTCAATATATGCATCCTCGTT
LOC_Os12g13720
OsAffx.31733.1.S1_at--366--571Chr12:7729588..7729612 (25 bp)
ATCCTCGTTCTACATGACACAGCAT
LOC_Os12g13720
OsAffx.31733.1.S1_at--788--7731Chr12:7729380..7729404 (25 bp)
GGTGGATCTGGCTGTACTACATCTC
LOC_Os12g13720
OsAffx.31733.1.S1_at--661--4051Chr12:7729353..7729377 (25 bp)
CGATGTCGTGGACGCTGAATCTCCT
LOC_Os12g13720
OsAffx.31733.1.S1_at--742--9731Chr12:7729203..7729227 (25 bp)
TAATATTGGCAGCATACCCTGTCCT
LOC_Os12g13720
Target Sequence 
GCCGTTGAACGCTCTGTCATGTACAGGGAAAGGTTTGCTGGAATGTACTCTCCTTGGGCCTACTCCTTTGCACAGGTTGC
TATGGAGATTCCCTATGTTTTGATGCTGGCATTGTTGTTCATGTTGATCGCATACCCGACAATAGGGTATGCCTGGACAG
CAGCGAAGTTCTGCTGGTTCTTTTACACCATGTTCTGCACGCTGCTCTACTTCGTCTACTTTGGAATGCTGATAGTATCA
ATCACCCCCAACCTCCAAGTGGCCTCAATATATGCATCCTCGTTCTACATGACACAGCATCTCCTTTCTGGCTTCGTCAT
GCCTCCTTCACAAATACCAAAATGGTGGATCTGGCTGTACTACATCTCCCCGATGTCGTGGACGCTGAATCTCCTCTTCA
CCACACAGTTCGGATTCGAGGACAACAGCAACATCCTTGTCTTTGGAGAGACTAAACCGATCGCAGCCTTCGTAAGAGAC
TATTTTGGTTTCCACCGCGAGCTGCTACCACTTTCTGCCATAATATTGGCAGCATACCCTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31733.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis