Browse Element(s) Details


Os.50029.1.S1_at

Description gb:AK119737.1
DB_XREF= gi:37989360
TID=Os.50029.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-D08, full insert sequence.
FL= gb:AK119737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g137601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13720OsAffx.31733.1.S1_at11/1112+7729148..7741956PDR-like ABC transporter, putative, expressed
LOC_Os12g13730Os.5382.1.S1_at11/1112+7745658..7746640expressed protein
LOC_Os12g13740NANA12+7750568..7751384hypothetical protein
LOC_Os12g13750Os.40360.1.S1_at9/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40360.1.S1_x_at5/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40855.5.S1_x_at3/1112+7753330..7755881hypothetical protein
LOC_Os12g13760Os.50029.1.S1_at1/1112+7760843..7761105hypothetical protein
LOC_Os12g13770OsAffx.379.1.S1_at1/1112+7774525..7782831retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50029.1.S1_at--394--10352Chr09:14849660..14849684 (25 bp)
TTTATTCGCTGAAATGTGCTTTGCA
NONE
Os.50029.1.S1_at--1111--2973Chr12:7761043..7761067 (25 bp)
AATGTGCTTTGCAGGCGGGTGAATC
LOC_Os12g13760
Os.50029.1.S1_at--565--5251Chr09:14849692..14849716 (25 bp)
GAATCTACCACCTGTGAAGATGTCA
NONE
Os.50029.1.S1_at--570--5351Chr09:14849707..14849731 (25 bp)
GAAGATGTCATCCACCTGTAAAAGT
NONE
Os.50029.1.S1_at--203--1251Chr09:14849729..14849753 (25 bp)
AGTTGATTTTCGTAGGTGGGCCTCG
NONE
Os.50029.1.S1_at--517--3771Chr09:14849750..14849774 (25 bp)
CTCGGGCCTGCCTGTGAAAATTATC
NONE
Os.50029.1.S1_at--518--8431Chr09:14849754..14849778 (25 bp)
GGCCTGCCTGTGAAAATTATCTATT
NONE
Os.50029.1.S1_at--230--451Chr09:14849772..14849796 (25 bp)
ATCTATTTTCACAATTGTTTGCTTA
NONE
Os.50029.1.S1_at--802--8771Chr09:14849787..14849811 (25 bp)
TGTTTGCTTATATGCGGAACGCCAA
NONE
Os.50029.1.S1_at--1064--1811Chr09:14849805..14849829 (25 bp)
ACGCCAATCCGCCTGAAAAGATGGA
NONE
Os.50029.1.S1_at--708--2751Chr09:14849871..14849895 (25 bp)
AAGAAACTGAGGACGGTATACACAC
NONE
Target Sequence 
TTTATTCGCTGAAATGTGCTTTGCAGGCGGGTGAATCTACCACCTGTGAAGATGTCATCCACCTGTAAAAGTTGATTTTC
GTAGGTGGGCCTCGGGCCTGCCTGTGAAAATTATCTATTTTCACAATTGTTTGCTTATATGCGGAACGCCAATCCGCCTG
AAAAGATGGATTTGGCCCGCCTGCAAAAATCTTTTTTCTAGTAGTGACAATAAGAAACTGAGGACGGTATACACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis