Browse Element(s) Details


OsAffx.379.1.S1_at

Description gb:NM_194984.1
DB_XREF= gi:37531327
TID=OsAffx.379.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0089D15.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0804011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g137701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g036201/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08014NANA10+4092818..4099080ABC-2 type transporter family protein
LOC_Os10g08018Os.26988.1.A1_at6/1110+4105057..4105937lecithin:cholesterol acyltransferase family protein, putative
LOC_Os10g08022Os.4576.1.S1_at11/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08022Os.8999.3.S1_x_at1/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08026Os.50978.1.S1_at11/1110+4112944..4114434Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os10g08030NANA10+4117963..4121663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.379.1.S1_at11/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.28520.1.S1_at1/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08050OsAffx.18169.1.S1_x_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08050OsAffx.18169.1.S1_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08060NANA10+4134853..4136932transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08070NANA10+4137599..4138279hypothetical protein
LOC_Os10g08080NANA10+4140182..4143396hypothetical protein
LOC_Os10g08090OsAffx.22699.1.S1_x_at2/1110+4145100..4147678retrotransposon protein, putative, unclassified
LOC_Os10g08100NANA10+4148504..4150408retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.379.1.S1_at--1057--1091Chr10:4124602..4124626 (25 bp)
AGTGGTCGGACATGATCTGGAGCAA
LOC_Os10g08040
OsAffx.379.1.S1_at--558--2951Chr10:4124568..4124592 (25 bp)
AAGGCCGTCAAGATCATGAATGCGA
LOC_Os10g08040
OsAffx.379.1.S1_at--506--5271Chr10:4124551..4124575 (25 bp)
GAATGCGACATGTTTACACCCAAAT
LOC_Os10g08040
OsAffx.379.1.S1_at--100--1211Chr10:4124474..4124498 (25 bp)
AGTTTCTTTCACAAGGCCGGTCAGA
LOC_Os10g08040
OsAffx.379.1.S1_at--157--7113Chr09:1806661..1806988 (25 bp)
GTCAGACCGCAGTTTTAGTTCATCT
LOC_Os09g03620
OsAffx.379.1.S1_at--138--1731Chr10:4123802..4124119 (25 bp)
ACCTCTTCAACAGCCGAATTTGCGA
LOC_Os10g08040
OsAffx.379.1.S1_at--1059--5211Chr10:4123787..4123811 (25 bp)
GAATTTGCGATCTACCCATCTGTGT
LOC_Os10g08040
OsAffx.379.1.S1_at--580--1813Chr11:10009046..10009070 (25 bp)
ACCCATCTGTGTTTCGTCGAGACGA
NONE
OsAffx.379.1.S1_at--388--6051Chr10:4123751..4123775 (25 bp)
GAGTTCCACGTCTGTTTCGGCTGTG
LOC_Os10g08040
OsAffx.379.1.S1_at--631--4734Chr12:1425385..1425767 (25 bp)
GCTGTGCGGCCGAAATCAATCCATA
NONE
OsAffx.379.1.S1_at--216--3032Chr11:10009105..10009129 (25 bp)
AATCCATACAATTCATCTACTGCTG
NONE
Target Sequence 
AGTGGTCGGACATGATCTGGAGCAAGGTTTCTTCAAGGCCGTCAAGATCATGAATGCGACATGTTTACACCCAAATTTGG
TACCTATGGACGAAATAGGGGAAAATTGCCAAAGTTTGGAAAGTATCGAGTTTCTTTCACAAGGCCGGTCAGACCGCAGT
TTTAGTTCATCTTTGTCGGTTTGCGCTGTAAACCGTCCGCCGCCGCTGCGAGAGTGCGACACCTCTTCAACAGCCGAATT
TGCGATCTACCCATCTGTGTTTCGTCGAGACGAGTTCCACGTCTGTTTCGGCTGTGCGGCCGAAATCAATCCATACAATT
CATCTACTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis