Browse Element(s) Details


Os.50978.1.S1_at

Description gb:AK059918.1
DB_XREF= gi:32969936
TID=Os.50978.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-F05, full insert sequence.
FL= gb:AK059918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0802611/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08014NANA10+4092818..4099080ABC-2 type transporter family protein
LOC_Os10g08018Os.26988.1.A1_at6/1110+4105057..4105937lecithin:cholesterol acyltransferase family protein, putative
LOC_Os10g08022Os.4576.1.S1_at11/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08022Os.8999.3.S1_x_at1/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08026Os.50978.1.S1_at11/1110+4112944..4114434Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os10g08030NANA10+4117963..4121663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.379.1.S1_at11/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.28520.1.S1_at1/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08050OsAffx.18169.1.S1_x_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08050OsAffx.18169.1.S1_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08060NANA10+4134853..4136932transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g08070NANA10+4137599..4138279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50978.1.S1_at--1035--8451Chr10:4113373..4113397 (25 bp)
TGGCGATGAACTTCAGAGCTCCTGT
LOC_Os10g08026
Os.50978.1.S1_at--371--1371Chr10:4113359..4113383 (25 bp)
AGAGCTCCTGTTGTGCCGACGACGT
LOC_Os10g08026
Os.50978.1.S1_at--992--8371Chr10:4113194..4113218 (25 bp)
GGCGATGATCCGATGCAGCAGTACT
LOC_Os10g08026
Os.50978.1.S1_at--216--1531Chr10:4113178..4113202 (25 bp)
AGCAGTACTACAAGTCCATCAAGAT
LOC_Os10g08026
Os.50978.1.S1_at--271--2811Chr10:4113158..4113182 (25 bp)
AAGATCGCCGGCATGTATCACGCCG
LOC_Os10g08026
Os.50978.1.S1_at--682--10411Chr10:4113130..4113154 (25 bp)
TTATCTCCGACGGTGTCGCCTTGGA
LOC_Os10g08026
Os.50978.1.S1_at--375--4171Chr10:4113114..4113138 (25 bp)
CGCCTTGGAGCGTTTGATCAGTGAG
LOC_Os10g08026
Os.50978.1.S1_at--738--8571Chr10:4113052..4113076 (25 bp)
TGGATTATCGTCGAGTTGCTCAACT
LOC_Os10g08026
Os.50978.1.S1_at--614--6451Chr10:4113020..4113044 (25 bp)
GATCACTTTTTCTATTCTCTTTAAC
LOC_Os10g08026
Os.50978.1.S1_at--686--6451Chr10:4112985..4113009 (25 bp)
GATCAACATGTATGCGCTACTTGTA
LOC_Os10g08026
Os.50978.1.S1_at--252--7071Chr10:4112963..4112987 (25 bp)
GTAATGTATTCACTTGGTTCCACAT
LOC_Os10g08026
Target Sequence 
TGGCGATGAACTTCAGAGCTCCTGTTGTGCCGACGACGTGCATCAACGGCATCGGCGTGCCCACGGCGGAGAAGCTGGTG
TACTGGGACGGCAACTTCGGCGAGGCCCCCGAAATCGTGTACGGCGACGGCGATGGGCTTGTCAATTCGGCGAGCATATT
GGCCCTCGACACGGTGATCGGCGATGATCCGATGCAGCAGTACTACAAGTCCATCAAGATCGCCGGCATGTATCACGCCG
GCGTTATCTCCGACGGTGTCGCCTTGGAGCGTTTGATCAGTGAGATTCTTCGGGAGAGTTTTGTGCAAGATTCCAAGAAG
GTGGATTATCGTCGAGTTGCTCAACTCTAAGTTGATCACTTTTTCTATTCTCTTTAACTCATCGTTTAGATCAACATGTA
TGCGCTACTTGTAATGTATTCACTTGGTTCCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis