Browse Element(s) Details


Os.4576.1.S1_at

Description gb:AK071547.1
DB_XREF= gi:32981570
TID=Os.4576.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4576 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023106E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099B20, full insert sequence.
FL= gb:AK071547.1 gb:AK099184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0802211/11Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08014NANA10+4092818..4099080ABC-2 type transporter family protein
LOC_Os10g08018Os.26988.1.A1_at6/1110+4105057..4105937lecithin:cholesterol acyltransferase family protein, putative
LOC_Os10g08022Os.4576.1.S1_at11/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08022Os.8999.3.S1_x_at1/1110+4109657..4111583Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os10g08026Os.50978.1.S1_at11/1110+4112944..4114434Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os10g08030NANA10+4117963..4121663retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.379.1.S1_at11/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08040OsAffx.28520.1.S1_at1/1110+4122736..4125243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08050OsAffx.18169.1.S1_x_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08050OsAffx.18169.1.S1_at11/1110+4133524..4133984lecithine cholesterol acyltransferase, putative
LOC_Os10g08060NANA10+4134853..4136932transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0006098biological_processpentose-phosphate shunt
GO:0004332molecular_functionfructose-bisphosphate aldolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4576.1.S1_at--48--1191Chr10:4109992..4110016 (25 bp)
AGTACTGATCTGCATCAGGCGCTGG
LOC_Os10g08022
Os.4576.1.S1_at--585--851Chr10:4109961..4109985 (25 bp)
ATGGCTTGGCTACCTGATCGATTTC
LOC_Os10g08022
Os.4576.1.S1_at--265--9971Chr10:4109951..4109975 (25 bp)
TACCTGATCGATTTCCCATTCTGGG
LOC_Os10g08022
Os.4576.1.S1_at--502--6211Chr10:4109897..4109921 (25 bp)
GAGGCTCTAACAGGATTCACAATTT
LOC_Os10g08022
Os.4576.1.S1_at--3--5231Chr10:4109857..4109881 (25 bp)
GAATTTTTCCCTTTCCGATAGATCG
LOC_Os10g08022
Os.4576.1.S1_at--341--6391Chr10:4109837..4109861 (25 bp)
GATCGAACCCTGGAGCACAATATAT
LOC_Os10g08022
Os.4576.1.S1_at--729--8651Chr10:4109811..4109835 (25 bp)
TGTGGTTATCTAAAAGCCTTGTCTT
LOC_Os10g08022
Os.4576.1.S1_at--302--8871Chr10:4109747..4109771 (25 bp)
TGATGAACATCAGCTGGCCCGGAGT
LOC_Os10g08022
Os.4576.1.S1_at--83--9671Chr10:4109738..4109762 (25 bp)
TCAGCTGGCCCGGAGTTTTTATTTT
LOC_Os10g08022
Os.4576.1.S1_at--883--10251Chr10:4109703..4109727 (25 bp)
TTTGTAACTGTCTGATTTGCCCGGT
LOC_Os10g08022
Os.4576.1.S1_at--954--4251Chr10:4109683..4109707 (25 bp)
CCGGTGCTGTGTGATTTTGTTGAAT
LOC_Os10g08022
Target Sequence 
AGTACTGATCTGCATCAGGCGCTGGCCTGCTATGGCTTGGCTACCTGATCGATTTCCCATTCTGGGGCCGTTACATAATG
CGGTTTTGATATCTAGAGGCTCTAACAGGATTCACAATTTCGGATCGGAATTTCAGAATTTTTCCCTTTCCGATAGATCG
AACCCTGGAGCACAATATATCTGTGGTTATCTAAAAGCCTTGTCTTAATAATCCAGAACCTTTTTTTTTCTTGTAAAATA
TTTGCTGATGAACATCAGCTGGCCCGGAGTTTTTATTTTTATCAATCACTTTGTAACTGTCTGATTTGCCCGGTGCTGTG
TGATTTTGTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4576.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis