Browse Element(s) Details


Os.5382.1.S1_at

Description gb:AK061457.1
DB_XREF= gi:32971475
TID=Os.5382.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H05, full insert sequence.
FL= gb:AK061457.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1373011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13700OsAffx.31730.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13700OsAffx.28472.1.S1_x_at1/1112+7721688..7721888hypothetical protein
LOC_Os12g13710NANA12+7725535..7727033hypothetical protein
LOC_Os12g13720OsAffx.31733.1.S1_at11/1112+7729148..7741956PDR-like ABC transporter, putative, expressed
LOC_Os12g13730Os.5382.1.S1_at11/1112+7745658..7746640expressed protein
LOC_Os12g13740NANA12+7750568..7751384hypothetical protein
LOC_Os12g13750Os.40360.1.S1_at9/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40360.1.S1_x_at5/1112+7753330..7755881hypothetical protein
LOC_Os12g13750Os.40855.5.S1_x_at3/1112+7753330..7755881hypothetical protein
LOC_Os12g13760Os.50029.1.S1_at1/1112+7760843..7761105hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5382.1.S1_at--411--1891Chr12:7746167..7746191 (25 bp)
ACGTCAAACACGACCATGTCCGGAT
LOC_Os12g13730
Os.5382.1.S1_at--994--751Chr12:7746152..7746176 (25 bp)
ATGTCCGGATGCTCAGGAAGCAGCG
LOC_Os12g13730
Os.5382.1.S1_at--1155--6951Chr12:7746112..7746136 (25 bp)
GTACGTAACACGATCGAACACCTCT
LOC_Os12g13730
Os.5382.1.S1_at--17--531Chr12:7746100..7746124 (25 bp)
ATCGAACACCTCTTTCTCTTAAGAA
LOC_Os12g13730
Os.5382.1.S1_at--824--5091Chr12:7745909..7745933 (25 bp)
GCACTATGAATTCTAAATCTTATCC
LOC_Os12g13730
Os.5382.1.S1_at--445--9751Chr12:7745882..7745906 (25 bp)
TATAATCCTAACTTTTACTAGTGGG
LOC_Os12g13730
Os.5382.1.S1_at--672--9891Chr12:7745867..7745891 (25 bp)
TACTAGTGGGTATTCAACATTTGCA
LOC_Os12g13730
Os.5382.1.S1_at--720--2511Chr12:7745852..7745876 (25 bp)
AACATTTGCACGTAGGATGCCCTGC
LOC_Os12g13730
Os.5382.1.S1_at--950--7971Chr12:7745838..7745862 (25 bp)
GGATGCCCTGCAGCTATACTAGTGG
LOC_Os12g13730
Os.5382.1.S1_at--1156--9031Chr12:7745830..7745854 (25 bp)
TGCAGCTATACTAGTGGCAGACATA
LOC_Os12g13730
Os.5382.1.S1_at--236--5671Chr12:7745811..7745835 (25 bp)
GACATAGGATGGTTGCGTCATCAAT
LOC_Os12g13730
Target Sequence 
ACGTCAAACACGACCATGTCCGGATGCTCAGGAAGCAGCGGGAGAGGATGGAGAGGTACGTAACACGATCGAACACCTCT
TTCTCTTAAGAAAAAAAAGATGTAAATTATATAAAAATTTTCATTAATAAATAGTAGTCAAATTTTGCATATTTTGTTTA
AAAAATAGTAGTCAAAATTTCATTTTTCAACACGTAATTTATATTACACATTAAATTTCATATCTATCATTGTAAATTAT
ATAAGTTTAATTTAATTTGCACTATGAATTCTAAATCTTATCCTATATAATCCTAACTTTTACTAGTGGGTATTCAACAT
TTGCACGTAGGATGCCCTGCAGCTATACTAGTGGCAGACATAGGATGGTTGCGTCATCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis