Browse Element(s) Details


OsAffx.8341.1.S1_at

Description gb:NM_195519.1
DB_XREF= gi:37532397
TID=OsAffx.8341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0082N11.17), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1496011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g022301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14930OsAffx.19950.1.S1_at1/1110+7583488..7585622Zinc knuckle family protein
LOC_Os10g14940NANA10+7586481..7587092hypothetical protein
LOC_Os10g14950NANA10+7588776..7591273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14960OsAffx.8341.1.S1_at11/1110+7592733..7593869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14970OsAffx.8340.1.S1_at11/1110+7594296..7595753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14980OsAffx.20590.1.S1_at11/1110+7596656..7598625retrotransposon protein, putative, unclassified
LOC_Os10g14990OsAffx.30486.1.S1_at1/1110+7600861..7603223retrotransposon protein, putative, unclassified
LOC_Os10g15000OsAffx.8469.1.A1_x_at1/1110+7605761..7606278retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g15010NANA10+7613400..7615701retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8341.1.S1_at--708--5332Chr10:7593276..7593300 (25 bp)
GAAGTTTTACATCCTGACTGGCTGG
LOC_Os10g14960
OsAffx.8341.1.S1_at--589--8191Chr10:7593319..7593343 (25 bp)
GGAAGAAGACAGGACAGTGCCGTAT
LOC_Os10g14960
OsAffx.8341.1.S1_at--329--1411Chr10:7593325..7593349 (25 bp)
AGACAGGACAGTGCCGTATGTGTGT
LOC_Os10g14960
OsAffx.8341.1.S1_at--652--7871Chr10:7593468..7593492 (25 bp)
GGTTATCACCAGATCAACTTGAAGG
LOC_Os10g14960
OsAffx.8341.1.S1_at--743--5351Chr10:7593506..7593530 (25 bp)
GAAGACCTCATTTATCACACCGTTT
LOC_Os10g14960
OsAffx.8341.1.S1_at--814--5832Chr10:7593509..7593533 (25 bp)
GACCTCATTTATCACACCGTTTGGA
LOC_Os10g14960
OsAffx.8341.1.S1_at--592--2151Chr10:7593522..7593546 (25 bp)
ACACCGTTTGGAGCTTATTTCTATA
LOC_Os10g14960
OsAffx.8341.1.S1_at--677--4891Chr10:7593534..7593558 (25 bp)
GCTTATTTCTATATCACCATGCCCT
LOC_Os10g14960
OsAffx.8341.1.S1_at--704--9533Chr10:7593541..7593565 (25 bp)
TCTATATCACCATGCCCTTCGGATT
LOC_Os10g14960
OsAffx.8341.1.S1_at--378--5311Chr10:7593674..7593698 (25 bp)
GAAGGATGACATAATTGCTGATCTA
LOC_Os10g14960
OsAffx.8341.1.S1_at--788--5651Chr10:7593681..7593705 (25 bp)
GACATAATTGCTGATCTAGAAGAAA
LOC_Os10g14960
Target Sequence 
GAAGTTTTACATCCTGACTGGCTGGCAAACCCAGTTTTGGTTTGGAAGAAGACAGGACAGTGCCGTATGTGTGTTGATTA
CACCGACCTCAACAAATCATGTCCTAAGGATCCTTTTGGGTTACCTCGCATTGACCAGGTGGTTGATTCAACAGCCGGCT
GCGAGCTACTCAGTTTTTTGGATTGTTACTCGGGTTATCACCAGATCAACTTGAAGGAATTCGACTGCTTGAAGACCTCA
TTTATCACACCGTTTGGAGCTTATTTCTATATCACCATGCCCTTCGGATTAAAGAATGATGGAGCAACCTATCAACGCAT
GATCCAGAGATGTTTTTCAACTCAAATTGGTCGCAATGTTGAAGCCTATGTTGATGATGTAGTCGTCAAGACCAAGCAGA
AGGATGACATAATTGCTGATCTAGAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis