Browse Element(s) Details


Os.18714.1.S1_a_at

Description gb:AK062163.1
DB_XREF= gi:32972181
TID=Os.18714.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nodulin-like protein (OSJNBa0082N11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B04, full insert sequence.
FL= gb:AK067578.1 gb:AK062163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1492011/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14930OsAffx.19950.1.S1_at1/1110+7583488..7585622Zinc knuckle family protein
LOC_Os10g14940NANA10+7586481..7587092hypothetical protein
LOC_Os10g14950NANA10+7588776..7591273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14960OsAffx.8341.1.S1_at11/1110+7592733..7593869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14970OsAffx.8340.1.S1_at11/1110+7594296..7595753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14980OsAffx.20590.1.S1_at11/1110+7596656..7598625retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18714.1.S1_a_at--969--3731Chr10:7569570..7569594 (25 bp)
CTAACCACACTGATATGCGCCATGG
LOC_Os10g14920
Os.18714.1.S1_a_at--355--611Chr10:7569556..7569580 (25 bp)
ATGCGCCATGGGTGTAGCACAGAGT
LOC_Os10g14920
Os.18714.1.S1_a_at--1037--7231Chr10:7569525..7569549 (25 bp)
GTCGCCCTAGTCATGGAGCGTGATA
LOC_Os10g14920
Os.18714.1.S1_a_at--481--5891Chr10:7569510..7569534 (25 bp)
GAGCGTGATATCAAGGCCTGGTTAA
LOC_Os10g14920
Os.18714.1.S1_a_at--630--4871Chr10:7569471..7569493 (23 bp)
GCTTTTTACAGCTGTCTACTCTGGC
LOC_Os10g14920
Os.18714.1.S1_a_at--942--1611Chr10:7569329..7569484 (25 bp)
AGCTGTCTACTCTGGCATAATGTGT
LOC_Os10g14920
Os.18714.1.S1_a_at--1024--4951Chr10:7569315..7569339 (25 bp)
GCATAATGTGTTCTGGAGTGGCTTA
LOC_Os10g14920
Os.18714.1.S1_a_at--1014--2451Chr10:7569010..7569034 (25 bp)
AACAAGGACCATGGCAATCAAGTTG
LOC_Os10g14920
Os.18714.1.S1_a_at--113--2531Chr10:7568957..7568981 (25 bp)
AACTTTTGAGCTACCATTGTCCACG
LOC_Os10g14920
Os.18714.1.S1_a_at--1106--11Chr10:7568942..7568966 (25 bp)
ATTGTCCACGACTAATGTTAACGAA
LOC_Os10g14920
Os.18714.1.S1_a_at--354--5391Chr10:7568920..7568944 (25 bp)
GAAGCACGTAGTCCTAATCATATTT
LOC_Os10g14920
Target Sequence 
CTAACCACACTGATATGCGCCATGGGTGTAGCACAGAGTGGGGCGGTCGCCCTAGTCATGGAGCGTGATATCAAGGCCTG
GTTAATTGGCTTTGATATGAGGCTTTTTACAGCTGTCTACTCTGGCATAATGTGTTCTGGAGTGGCTTATTATGTGCAAG
GTATGGTTATAAAGGAGAGGGGTCCCGTATTTGTCACTGCCTTTAGCCCTCTTTGCATGATTATAGTGACTATTTTGGGA
TCTTTCATTCTTTGTGAGGTTGTTACCTTGGGAAGGGTGATTGGTGCAATAATTATTGTTGTGGGCCTGTATGCTCTCAT
TTGGGGCAAGAACAAGGACCATGGCAATCAAGTTGATCAAGATGACAATTTTGAGAAGCAGAAAACTTTTGAGCTACCAT
TGTCCACGACTAATGTTAACGAAGCACGTAGTCCTAATCATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18714.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis