Browse Element(s) Details


OsAffx.302.1.S1_at

Description gb:NM_195515.1
DB_XREF= gi:37532389
TID=OsAffx.302.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0082N11.13), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1490011/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14840NANA10+7526991..7528088hypothetical protein
LOC_Os10g14850OsAffx.15708.1.S1_at1/1110+7529548..7530778hypothetical protein
LOC_Os10g14860OsAffx.21779.1.S1_at11/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14860OsAffx.21779.3.S1_at2/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14870Os.5438.1.S1_at11/1110+7534704..7536767heavy metal-associated domain containing protein, expressed
LOC_Os10g14880OsAffx.303.1.S1_at11/1110+7538556..7538897retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.302.1.S1_at--272--6311Chr10:7552975..7552999 (25 bp)
GATGAGACTACAATTGTGCAATCTC
LOC_Os10g14900
OsAffx.302.1.S1_at--104--6471Chr10:7552942..7552966 (25 bp)
GATAAGGTCTTGAGTCAATTTGGTT
LOC_Os10g14900
OsAffx.302.1.S1_at--286--9912Chr10:8089786..8089805 (20 bp)
TACTCTTTATGATCCCAGTGCGGTA
NONE
OsAffx.302.1.S1_at--780--10111Chr10:7552888..7552912 (25 bp)
TATGATCCCAGTGCGGTATTAAGGA
LOC_Os10g14900
OsAffx.302.1.S1_at--315--1491Chr10:7552850..7552874 (25 bp)
AGCAAGGAATCAACTACGATACTCC
LOC_Os10g14900
OsAffx.302.1.S1_at--49--6751Chr10:7552815..7552839 (25 bp)
GTTCATTGATATACTTACCTAGTGT
LOC_Os10g14900
OsAffx.302.1.S1_at--541--2031Chr10:7552803..7552827 (25 bp)
ACTTACCTAGTGTAACGAGGCCTCA
LOC_Os10g14900
OsAffx.302.1.S1_at--279--7451Chr10:7552794..7552818 (25 bp)
GTGTAACGAGGCCTCATATCTCATT
LOC_Os10g14900
OsAffx.302.1.S1_at--1072--2811Chr10:7552759..7552783 (25 bp)
AAGTTGAGCCGGCTTGTCTCAAATT
LOC_Os10g14900
OsAffx.302.1.S1_at--996--5831Chr10:7552754..7552778 (25 bp)
GAGCCGGCTTGTCTCAAATTCAGGA
LOC_Os10g14900
OsAffx.302.1.S1_at--142--4271Chr10:7552751..7552775 (25 bp)
CCGGCTTGTCTCAAATTCAGGAGAA
LOC_Os10g14900
Target Sequence 
GATGAGACTACAATTGTGCAATCTCACTATGTGGATAAGGTCTTGAGTCAATTTGGTTATAGTGACTGCAAGCCAGCTCC
TACTCTTTATGATCCCAGTGCGGTATTAAGGAAAAACCATAGAATAGCAAGGAATCAACTACGATACTCCCAGATCATTG
GTTCATTGATATACTTACCTAGTGTAACGAGGCCTCATATCTCATTTGCTGTGAGCAAGTTGAGCCGGCTTGTCTCAAAT
TCAGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis