Browse Element(s) Details


Os.5438.1.S1_at

Description gb:AK070579.1
DB_XREF= gi:32980603
TID=Os.5438.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATFP3 (OSJNBa0082N11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060P21, full insert sequence.
FL= gb:AK070579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1487011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14294Os.10827.1.S1_x_at10/1110+7506475..7510736transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14294Os.46055.2.S1_x_at5/1110+7506475..7510736transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14800NANA10+7512829..7513254hypothetical protein
LOC_Os10g14814Os.8788.1.S1_at6/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14814Os.20353.1.S2_at4/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14830NANA10+7526009..7526596retrotransposon protein, putative, unclassified
LOC_Os10g14840NANA10+7526991..7528088hypothetical protein
LOC_Os10g14850OsAffx.15708.1.S1_at1/1110+7529548..7530778hypothetical protein
LOC_Os10g14860OsAffx.21779.1.S1_at11/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14860OsAffx.21779.3.S1_at2/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14870Os.5438.1.S1_at11/1110+7534704..7536767heavy metal-associated domain containing protein, expressed
LOC_Os10g14880OsAffx.303.1.S1_at11/1110+7538556..7538897retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0046916biological_processtransition metal ion homeostasis
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
GO:0046914molecular_functiontransition metal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5438.1.S1_at--265--3751Chr10:7536178..7536202 (25 bp)
CTCAACGGCCTAGTGGTCGTCAAAG
LOC_Os10g14870
Os.5438.1.S1_at--965--8331Chr10:7536216..7536240 (25 bp)
GGCTGTGCTCATCGAAAGCATCCAG
LOC_Os10g14870
Os.5438.1.S1_at--681--9731Chr10:7536336..7536360 (25 bp)
TAAGGCCGACGGCATCGAAGAGATC
LOC_Os10g14870
Os.5438.1.S1_at--645--9891Chr10:7536391..7536415 (25 bp)
TACTATGTCGAGTACGTCTACCCAT
LOC_Os10g14870
Os.5438.1.S1_at--731--1931Chr10:7536436..7536460 (25 bp)
ACGGCACTGGTGTCCGAGGAGTTCA
LOC_Os10g14870
Os.5438.1.S1_at--688--7231Chr10:7536487..7536511 (25 bp)
GTCGCGTGATACCATCTGAAGCTGT
LOC_Os10g14870
Os.5438.1.S1_at--888--1591Chr10:7536506..7536530 (25 bp)
AGCTGTTCTTTTGCTTAGACGGTGG
LOC_Os10g14870
Os.5438.1.S1_at--643--1571Chr10:7536623..7536647 (25 bp)
AGCTCGCATTGCTCAATTGACTAGC
LOC_Os10g14870
Os.5438.1.S1_at--887--10751Chr10:7536639..7536663 (25 bp)
TTGACTAGCTCTCCTATGGTACAAC
LOC_Os10g14870
Os.5438.1.S1_at--870--7871Chr10:7536675..7536699 (25 bp)
GGTTTAGATTTGACACTTGTGCTCG
LOC_Os10g14870
Os.5438.1.S1_at--562--2071Chr10:7536689..7536713 (25 bp)
ACTTGTGCTCGTATTTCTCATTAGA
LOC_Os10g14870
Target Sequence 
CTCAACGGCCTAGTGGTCGTCAAAGGGGTGATGGATCCGGCTGTGCTCATCGAAAGCATCCAGCGGAAGACGCGGAGGCC
GGCAGTCATCGTCGAAGAGGTGAAGCCGCGGGAGGAGGAGAAGAAGGCAGAGGAGGAAGAGAAGAAGCCAGATGAGGATA
AGGCCGACGGCATCGAAGAGATCAAGAAGTATGACTTCTGGCCNGCCCGTCCAGTACTATGTCGAGTACGTCTACCCATA
CCCGCTACCGCCGCCACCGACGGCACTGGTGTCCGAGGAGTTCAGTGACGAGAACCCGAACGCTTGCACCGTCGCGTGAT
ACCATCTGAAGCTGTTCTTTTGCTTAGACGGTGGTTTCTATGCTAGAAATGCATGCTGATATGGTAATAAAATGAGTGGT
TTTGAGAACTTGTACAAGATTGTGTTATTAAGTATCATGAAAAGTGAGCTCGCATTGCTCAATTGACTAGCTCTCCTATG
GTACAACCTATTTACCCGGGTTTAGATTTGACACTTGTGCTCGTATTTCTCATTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis