Browse Element(s) Details


Os.20353.1.S2_at

Description gb:AK120106.1
DB_XREF= gi:37989729
TID=Os.20353.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to 5-oxoprolinase (P0458E05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013023K07, full insert sequence.
FL= gb:AK120106.1 gb:AK120672.1 gb:AK067542.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7351411/115-oxoprolinase, putative, expressed
LOC_Os10g148144/11Riboflavin kinase/FAD synthetase family protein
LOC_Os08g306341/11DC1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009231biological_processriboflavin biosynthesis
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003919molecular_functionFMN adenylyltransferase activity
GO:0008531molecular_functionriboflavin kinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20353.1.S2_at--616--2455Chr12:24810087..24810111 (25 bp)
AACAATTCTTACTTCCTTGCCAATT
NONE
Os.20353.1.S2_at--414--74Chr12:16133901..16133925 (25 bp)
ATTGCGCTTAGCTAGGTTATCCCTT
NONE
Os.20353.1.S2_at--543--8193Chr12:16133845..16133869 (25 bp)
GGAAGATCTTCACTTTAAGCGGTAT
NONE
Os.20353.1.S2_at--171--4613Chr12:24810252..24810276 (25 bp)
GCGACTTCACTGAAAACTCTCCATT
NONE
Os.20353.1.S2_at--76--5373Chr12:16133671..16133695 (25 bp)
GAAGAAGGTTATTCCACGCCACTAA
NONE
Os.20353.1.S2_at--754--9811Chr01:42919328..42919352 (25 bp)
TAACTGTATTGGTTGTCTCTGCACA
LOC_Os01g73514
Os.20353.1.S2_at--438--10671Chr01:42919289..42919313 (25 bp)
TTCCTCTCCTCATGTTACTGTTACA
LOC_Os01g73514
Os.20353.1.S2_at--458--5591Chr01:42919261..42919285 (25 bp)
GAAATTACTCCTACCATACTGGTGT
LOC_Os01g73514
Os.20353.1.S2_at--152--331Chr01:42919246..42919270 (25 bp)
ATACTGGTGTTTACGCTGCACTTGG
LOC_Os01g73514
Os.20353.1.S2_at--467--10471Chr01:42919236..42919260 (25 bp)
TTACGCTGCACTTGGTGGAGACTCA
LOC_Os01g73514
Os.20353.1.S2_at--804--2011Chr01:42919216..42919240 (25 bp)
ACTCAAGCTGTTGTTTCTGTCTAAG
LOC_Os01g73514
Target Sequence 
AACAATTCTTACTTCCTTGCCAATTGCGCTTAGCTAGGTTATCCCTTGTCAAAACTACCCCACGACGTAAATACCATAGG
AAGATCTTCACTTTAAGCGGTATTTTTAATTTCCAAATTACTTTGTTTATGTTGGGCAAATCTGAATGTACCAAGGCAAG
ATAATGCGACTTCACTGAAAACTCTCCATTTTGGGTTAAATTCCAATGAAACTTATCTTGATCCTGAGTAAGAACTAGGT
TAGCGATTCGTGGAAGAAGGTTATTCCACGCCACTAATTTTGGCTAATGTTTTGTGTTAAAAAAAATAGTAATGTGGAAT
CATTTATCTTTTTAACGATTAACTGTATTGGTTGTCTCTGCACAGCATGGCTTTTGGTTTCCTCTCCTCATGTTACTGTT
ACATAAGAAATTACTCCTACCATACTGGTGTTTACGCTGCACTTGGTGGAGACTCAAGCTGTTGTTTCTGTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20353.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis