Browse Element(s) Details


OsAffx.11840.2.S1_at

Description tigr:9629.m07277
TID=OsAffx.11840.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7348010/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11840.2.S1_at--349--2571Chr01:42909459..42909483 (25 bp)
AACGAGTAAACTATGAGGGATTCTA
LOC_Os01g73480
OsAffx.11840.2.S1_at--548--2531Chr01:42909467..42909491 (25 bp)
AACTATGAGGGATTCTACACCATGG
LOC_Os01g73480
OsAffx.11840.2.S1_at--767--8891Chr01:42909472..42909496 (25 bp)
TGAGGGATTCTACACCATGGTTCTT
LOC_Os01g73480
OsAffx.11840.2.S1_at--871--7651Chr01:42909475..42909499 (25 bp)
GGGATTCTACACCATGGTTCTTGAG
LOC_Os01g73480
OsAffx.11840.2.S1_at--75--6571Chr01:42909477..42909501 (25 bp)
GATTCTACACCATGGTTCTTGAGAA
LOC_Os01g73480
OsAffx.11840.2.S1_at--907--5971Chr01:42909507..42909531 (25 bp)
GAGAAATCATTTCAGTAGCCTTGCT
LOC_Os01g73480
OsAffx.11840.2.S1_at--585--3071Chr01:42909511..42909535 (25 bp)
AATCATTTCAGTAGCCTTGCTGAGG
LOC_Os01g73480
OsAffx.11840.2.S1_at--416--191Chr01:42909515..42909537 (23 bp)
ATTTCAGTAGCCTTGCTGAGGTTCC
LOC_Os01g73480
OsAffx.11840.2.S1_at--372--10532Chr01:42909517..42909537 (21 bp)
TTCAGTAGCCTTGCTGAGGTTCCAT
LOC_Os01g73480
OsAffx.11840.2.S1_at--503--6971NONE
GTAGCCTTGCTGAGGTTCCATGGCA
NONE
OsAffx.11840.2.S1_at--308--4451Chr01:42909524..42909859 (25 bp)
GCCTTGCTGAGGTTCCATGGCAGGA
LOC_Os01g73480
Target Sequence 
AACGAGTAAACTATGAGGGATTCTACACCATGGTTCTTGAGAAGGATGGAGAAATCATTTCAGTAGCCTTGCTGAGGTTC
CATGGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11840.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis