Browse Element(s) Details


Os.11630.1.S1_at

Description gb:AK104789.1
DB_XREF= gi:32989998
TID=Os.11630.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative uridylate kinase (P0458E05.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-E08, full insert sequence.
FL= gb:AK069647.1 gb:AK104789.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7345011/11Uridylate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006221biological_processpyrimidine nucleotide biosynthesis
GO:0008652biological_processamino acid biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009041molecular_functionuridylate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11630.1.S1_at--788--3831Chr01:42892523..42892546 (24 bp)
CTGCTGCTCTTCGTTGTGCAGAAAT
LOC_Os01g73450
Os.11630.1.S1_at--595--10751Chr01:42893193..42893217 (25 bp)
TTGACGGTGTGTACGACGCAGACCC
LOC_Os01g73450
Os.11630.1.S1_at--428--4311Chr01:42893239..42893263 (25 bp)
CCTTCTTGAGGCTGTGAGCTACCAT
LOC_Os01g73450
Os.11630.1.S1_at--849--2771Chr01:42893275..42893299 (25 bp)
AAGAGACCTCTCAGTAATGGACATG
LOC_Os01g73450
Os.11630.1.S1_at--171--691Chr01:42893297..42893321 (25 bp)
ATGACTGCCATTACGCTATGCCAAG
LOC_Os01g73450
Os.11630.1.S1_at--394--3271Chr01:42893326..42893431 (25 bp)
CAACATTCCTGTTGTCGTGTTTAAT
LOC_Os01g73450
Os.11630.1.S1_at--166--7931Chr01:42893476..42893500 (25 bp)
GGTTGGCACGTTTATAGGCTGCACA
LOC_Os01g73450
Os.11630.1.S1_at--304--191Chr01:42893566..42893590 (25 bp)
ATTTCACTGGAGCTCTCTGTCGCTA
LOC_Os01g73450
Os.11630.1.S1_at--868--8671Chr01:42893593..42893617 (25 bp)
TGTGTAGCTGCATTGCCTATTGCTT
LOC_Os01g73450
Os.11630.1.S1_at--821--10711Chr01:42893612..42893636 (25 bp)
TTGCTTGGTAACATGTGGATCTCTA
LOC_Os01g73450
Os.11630.1.S1_at--655--571Chr01:42893660..42893684 (25 bp)
ATCCAAATCCTGGTTCCTTGTACAA
LOC_Os01g73450
Target Sequence 
CTGCTGCTCTTCGTTGTGCAGAAATCAATGCAGAGGTAGTACTTAAGGCAACAAATGTTGACGGTGTGTACGACGCAGAC
CCCAAGCGTAACCCAAATGCCCGCCTTCTTGAGGCTGTGAGCTACCATGAGGTGCAAACAAGAGACCTCTCAGTAATGGA
CATGACTGCCATTACGCTATGCCAAGAAAACAACATTCCTGTTGTCGTGTTTAATTTGCAAAAACCTGGAAATATTGCGA
AAGCTATTGTTGGTGAGAAGGTTGGCACGTTTATAGGCTGCACAAAAGATCAGGACCAGATTGTGGGGAATGCACTGGAT
CAAGAAAGAAGATTGGTGAACGAGTTATGATTTCACTGGAGCTCTCTGTCGCTAGCTGTGTAGCTGCATTGCCTATTGCT
TGGTAACATGTGGATCTCTAGAGTTTTTAGGCTAGAATAGCTTATCCAAATCCTGGTTCCTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis