Browse Element(s) Details


OsAffx.26722.2.S1_s_at

Description tigr:9633.m00316
TID=OsAffx.26722.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY transcription factor IId-6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0390011/11WRKY DNA binding domain containing protein, expressed
LOC_Os01g734801/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.1.S1_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.2.S1_s_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03910Os.16058.1.S1_at11/115+1722623..1726877TPR Domain containing protein, expressed
LOC_Os05g03920Os.27043.1.A1_at8/115+1730509..1733705Protein kinase domain containing protein, expressed
LOC_Os05g03930NANA5+1736758..1737058hypothetical protein
LOC_Os05g03940NANA5+1744708..1748981transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26722.2.S1_s_at--1107--932Chr05:1722031..1722055 (25 bp)
AGGAATGATGCATCTCTGCTCATCA
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--543--9851Chr05:1722061..1722085 (25 bp)
TACACCTCAGATCACAACCATGACA
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--443--671Chr05:1722080..1722104 (25 bp)
ATGACAACTATGCTGCTACTACTAC
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--784--3131Chr05:1722106..1722130 (25 bp)
AATTCAGTCCAAGAACAGGCACATA
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--1111--551Chr05:1722131..1722155 (25 bp)
ATCCTGACACAAGTGATCCTCTCAG
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--1092--7391Chr05:1722143..1722167 (25 bp)
GTGATCCTCTCAGCAATGGCATGTC
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--740--8271Chr05:1722160..1722184 (25 bp)
GGCATGTCCCTTGCTGAGGTAGTAA
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--856--6931Chr05:1722178..1722202 (25 bp)
GTAGTAACAGTTGCATCCTCCAAGC
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--909--551Chr05:1722192..1722216 (25 bp)
ATCCTCCAAGCTGTCCGGTGAAGAG
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--1047--971Chr05:1722215..1722239 (25 bp)
AGGAGAGCTGTGACTTCTTTGATGA
LOC_Os05g03900
OsAffx.26722.2.S1_s_at--280--10771Chr05:1722242..1722266 (25 bp)
TTGAGGAGCTCCCAGTGTCTGCATC
LOC_Os05g03900
Target Sequence 
AGGAATGATGCATCTCTGCTCATCATCACCTACACCTCAGATCACAACCATGACAACTATGCTGCTACTACTACAAATTC
AGTCCAAGAACAGGCACATAATCCTGACACAAGTGATCCTCTCAGCAATGGCATGTCCCTTGCTGAGGTAGTAACAGTTG
CATCCTCCAAGCTGTCCGGTGAAGAGGAGAGCTGTGACTTCTTTGATGAGCTTGAGGAGCTCCCAGTGTCTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26722.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis