Browse Element(s) Details


Os.16058.1.S1_at

Description gb:AK060436.1
DB_XREF= gi:32970454
TID=Os.16058.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033095K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-C12, full insert sequence.
FL= gb:AK102515.1 gb:AK060436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0391011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.1.S1_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.2.S1_s_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03910Os.16058.1.S1_at11/115+1722623..1726877TPR Domain containing protein, expressed
LOC_Os05g03920Os.27043.1.A1_at8/115+1730509..1733705Protein kinase domain containing protein, expressed
LOC_Os05g03930NANA5+1736758..1737058hypothetical protein
LOC_Os05g03940NANA5+1744708..1748981transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006913biological_processnucleocytoplasmic transport
GO:0010017biological_processred or far red light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0030176cellular_componentintegral to endoplasmic reticulum membrane
GO:0004040molecular_functionamidase activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16058.1.S1_at--1058--6691Chr05:1723455..1723479 (25 bp)
GTTCCCCGTTTTGACTTGATAATCA
LOC_Os05g03910
Os.16058.1.S1_at--647--9731Chr05:1723436..1723460 (25 bp)
TAATCATGTGCCTTTCATCCATGCA
LOC_Os05g03910
Os.16058.1.S1_at--776--7951Chr05:1723079..1723103 (25 bp)
GGATCAGGTTGAAGCCCTCAGGCAA
LOC_Os05g03910
Os.16058.1.S1_at--528--5951Chr05:1722984..1723008 (25 bp)
GAGACAGCTCGTTAGAAACCTTTTA
LOC_Os05g03910
Os.16058.1.S1_at--3--2371Chr05:1722969..1722993 (25 bp)
AAACCTTTTACGCTCTAGCCAATTG
LOC_Os05g03910
Os.16058.1.S1_at--881--8671Chr05:1722940..1722964 (25 bp)
TGTGTAACACCCTTTTCCTGTAGAA
LOC_Os05g03910
Os.16058.1.S1_at--786--3751Chr05:1722821..1722845 (25 bp)
CTCATGGACCTTTGCTGGCTGAAAA
LOC_Os05g03910
Os.16058.1.S1_at--1051--2931Chr05:1722798..1722822 (25 bp)
AAGGCTGTACCTTCATATTCTTGAT
LOC_Os05g03910
Os.16058.1.S1_at--980--111Chr05:1722782..1722806 (25 bp)
ATTCTTGATGCATATGTGCCCCTGG
LOC_Os05g03910
Os.16058.1.S1_at--59--7171Chr05:1722733..1722757 (25 bp)
GTCTCTATACCCTGATGTAGCGGAT
LOC_Os05g03910
Os.16058.1.S1_at--119--6971Chr05:1722717..1722741 (25 bp)
GTAGCGGATTCCCTGACACTGACAT
LOC_Os05g03910
Target Sequence 
GTTCCCCGTTTTGACTTGATAATCATGTGCCTTTCATCCATGCATAAATCTGAATTACGGAAGGTCTGGGATCAAATATT
CCTTGCTGAAACTGCATCAGCGGATCAGGTTGAAGCCCTCAGGCAACTTCGAGCCAAATATATTCAGGAAGGATTGCAGG
ATAACATGTTCACTTCAAATTAATGATGCTGATGCTGAGACAGCTCGTTAGAAACCTTTTACGCTCTAGCCAATTGATAT
TGTGTAACACCCTTTTCCTGTAGAAATGAAATGCTAAACTCAGTGTGGGGGGTAGTCAATTAATGGTGGAAGTTATAAAG
TTGTCTCAGAAACATCCATCAAAGCATGCGATTGTGAAGCTCATGGACCTTTGCTGGCTGAAAAGGCTGTACCTTCATAT
TCTTGATGCATATGTGCCCCTGGGGCCAGGGTTGCCGAGTTCTGCCTGTCTCTATACCCTGATGTAGCGGATTCCCTGAC
ACTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis