Browse Element(s) Details


Os.4162.1.S1_at

Description gb:AF050180.1
DB_XREF= gi:2935572
GEN=Oskn2
TID=Os.4162.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4162 (NCBI UniGene Cluster)
DEF=Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn2) mRNA, complete cds.
PROD=KNOX class homeodomain protein
FL= gb:AF050180.1 gb:AB028885.1 gb:AK111878.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0388411/11KNOX2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.1.S1_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03900OsAffx.26722.2.S1_s_at11/115+1721096..1723308WRKY DNA binding domain containing protein, expressed
LOC_Os05g03910Os.16058.1.S1_at11/115+1722623..1726877TPR Domain containing protein, expressed
LOC_Os05g03920Os.27043.1.A1_at8/115+1730509..1733705Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4162.1.S1_at--338--6171Chr05:1702920..1702944 (25 bp)
GAGGATCCTCCTCCGGGACGACACT
LOC_Os05g03884
Os.4162.1.S1_at--411--8111Chr05:1702905..1702929 (25 bp)
GGACGACACTGTACTTCGACACCGG
LOC_Os05g03884
Os.4162.1.S1_at--993--5631Chr05:1702888..1702912 (25 bp)
GACACCGGCACAATTGGTCCATGAT
LOC_Os05g03884
Os.4162.1.S1_at--770--9231Chr05:1702871..1702895 (25 bp)
TCCATGATCAGATTGCACTCCAAAT
LOC_Os05g03884
Os.4162.1.S1_at--554--6951Chr05:1702841..1702865 (25 bp)
GTAGCACCTTGCAACAGACATTGGC
LOC_Os05g03884
Os.4162.1.S1_at--317--8251Chr05:1702819..1702843 (25 bp)
GGCAGGTATTACCTGCTGCTACACC
LOC_Os05g03884
Os.4162.1.S1_at--258--9091Chr05:1702803..1702827 (25 bp)
TGCTACACCCTCTGTGAGGAGCAAG
LOC_Os05g03884
Os.4162.1.S1_at--964--3071Chr05:1702737..1702761 (25 bp)
AATAACCTCATCATTTTGTCGAAAT
LOC_Os05g03884
Os.4162.1.S1_at--551--5831Chr05:1702676..1702700 (25 bp)
GACCTGTAAAAACTTGCCTGCATTC
LOC_Os05g03884
Os.4162.1.S1_at--838--4211Chr05:1702660..1702684 (25 bp)
CCTGCATTCAGCTACCATAACATTA
LOC_Os05g03884
Os.4162.1.S1_at--568--10791Chr05:1702630..1702654 (25 bp)
TTGTTTGTATCCCTGACAACTGCAT
LOC_Os05g03884
Target Sequence 
GAGGATCCTCCTCCGGGACGACACTGTACTTCGACACCGGCACAATTGGTCCATGATCAGATTGCACTCCAAATTAAATG
TAGCACCTTGCAACAGACATTGGCAGGTATTACCTGCTGCTACACCCTCTGTGAGGAGCAAGGGATGATCATATATTAAA
AGGAAAAAAAGATGAAATCAATCAATAACCTCATCATTTTGTCGAAATTATTGTGTATATGGTGTTGTAAGAGGGAGTTG
GGATGACCTGTAAAAACTTGCCTGCATTCAGCTACCATAACATTAATTAATTGTTTGTATCCCTGACAACTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis