Browse Element(s) Details


Os.12568.1.S1_at

Description gb:AK103315.1
DB_XREF= gi:32988524
TID=Os.12568.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12568 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for gamma-glutamylcysteine synthetase (gcs gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125H02, full insert sequence.
FL= gb:AK103315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0382011/11Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_x_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830Os.23217.1.S1_s_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03830OsAffx.14529.1.S1_at11/115+1683019..1685087Acetylornithine aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os05g03840OsAffx.4243.1.S1_at11/115+1685199..1687100Glycosyl hydrolase family 9 protein
LOC_Os05g03850NANA5+1694722..1694979retrotransposon protein, putative, unclassified
LOC_Os05g03860Os.3373.1.S1_at11/115+1695736..1697113bZIP transcription factor family protein, expressed
LOC_Os05g03870Os.54175.1.S1_at11/115+1698490..1699237expressed protein
LOC_Os05g03884OsAffx.2978.2.S1_s_at11/115+1702540..1708864KNOX2 domain containing protein, expressed
LOC_Os05g03884Os.4162.1.S1_at11/115+1702540..1708864KNOX2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006750biological_processglutathione biosynthesis
GO:0009408biological_processresponse to heat
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009908biological_processflower development
GO:0010193biological_processresponse to ozone
GO:0046686biological_processresponse to cadmium ion
GO:0009507cellular_componentchloroplast
GO:0004357molecular_functionglutamate-cysteine ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12568.1.S1_at--102--331Chr05:1680590..1680614 (25 bp)
ATACAGAAAAAACCTCATATCCATT
LOC_Os05g03820
Os.12568.1.S1_at--507--5531Chr05:1680595..1680619 (25 bp)
GAAAAAACCTCATATCCATTCTATT
LOC_Os05g03820
Os.12568.1.S1_at--534--2411Chr05:1680598..1680622 (25 bp)
AAAACCTCATATCCATTCTATTTCA
LOC_Os05g03820
Os.12568.1.S1_at--348--2631Chr05:1680600..1680624 (25 bp)
AACCTCATATCCATTCTATTTCATG
LOC_Os05g03820
Os.12568.1.S1_at--208--4291Chr05:1680602..1680626 (25 bp)
CCTCATATCCATTCTATTTCATGCC
LOC_Os05g03820
Os.12568.1.S1_at--444--9771Chr05:1680635..1680659 (25 bp)
TAATGTCCGCCATCCGTTCTTCTTG
LOC_Os05g03820
Os.12568.1.S1_at--627--2971Chr05:1680636..1680660 (25 bp)
AATGTCCGCCATCCGTTCTTCTTGA
LOC_Os05g03820
Os.12568.1.S1_at--487--4431Chr05:1680643..1680667 (25 bp)
GCCATCCGTTCTTCTTGAGCCTGAA
LOC_Os05g03820
Os.12568.1.S1_at--681--3531Chr05:1680645..1680669 (25 bp)
CATCCGTTCTTCTTGAGCCTGAAGA
LOC_Os05g03820
Os.12568.1.S1_at--702--551Chr05:1680646..1680670 (25 bp)
ATCCGTTCTTCTTGAGCCTGAAGAG
LOC_Os05g03820
Os.12568.1.S1_at--288--4231Chr05:1680648..1680672 (25 bp)
CCGTTCTTCTTGAGCCTGAAGAGGG
LOC_Os05g03820
Target Sequence 
ATACAGAAAAAACCTCATATCCATTCTATTTCATGCCTCGGCAGCTAATGTCCGCCATCCGTTCTTCTTGAGCCTGAAGA
GGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12568.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis