Browse Element(s) Details


Os.8659.1.S1_at

Description gb:AY266290.1
DB_XREF= gi:30420735
GEN=OZT
TID=Os.8659.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.8659 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) zinc transporter (OZT) mRNA, complete cds.
PROD=zinc transporter
FL= gb:AK100735.1 gb:AY266290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0378011/11cation diffusion facilitator family transporter containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03750Os.23808.1.S1_x_at11/115+1630055..1632403expressed protein
LOC_Os05g03750Os.23808.3.S1_x_at9/115+1630055..1632403expressed protein
LOC_Os05g03760Os.11774.1.S1_s_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03760Os.11774.1.S1_x_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03770Os.55734.1.S1_at11/115+1644535..1646940expressed protein
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed
LOC_Os05g03790OsAffx.26720.1.S1_at11/115+1660031..1660321hypothetical protein
LOC_Os05g03800OsAffx.14528.1.S1_x_at11/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.1.S1_at10/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.2.S1_x_at6/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800OsAffx.14528.3.S1_x_at3/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03800Os.5212.1.S1_at1/115+1664890..1671989transposon protein, putative, unclassified
LOC_Os05g03810NANA5+1673273..1675282trehalose-phosphatase family protein
LOC_Os05g03820Os.12568.2.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_x_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed
LOC_Os05g03820Os.12568.1.S1_at11/115+1676531..1681049Glutamate-cysteine ligase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006829biological_processzinc ion transport
GO:0006882biological_processzinc ion homeostasis
GO:0010038biological_processresponse to metal ion
GO:0005774cellular_componentvacuolar membrane
GO:0005385molecular_functionzinc ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0015562molecular_functionefflux permease activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8659.1.S1_at--879--5591Chr05:1654028..1654052 (25 bp)
GACAATCACTCAGGACGCAGACGCT
LOC_Os05g03780
Os.8659.1.S1_at--700--2091Chr05:1653957..1653981 (25 bp)
ACATCAGCCATGTGACCATTCAGAT
LOC_Os05g03780
Os.8659.1.S1_at--440--10551Chr05:1653869..1653893 (25 bp)
TTCATCTCATCTCATGGGACCAACT
LOC_Os05g03780
Os.8659.1.S1_at--185--7611Chr05:1653854..1653878 (25 bp)
GGGACCAACTTATCAGGAACCTGTT
LOC_Os05g03780
Os.8659.1.S1_at--880--6771Chr05:1653813..1653837 (25 bp)
GTTACTGTTAGCTCTGCAGTGCAAA
LOC_Os05g03780
Os.8659.1.S1_at--94--1351Chr05:1653778..1653802 (25 bp)
AGAGTCCAACAATTCCTGCAGGTTC
LOC_Os05g03780
Os.8659.1.S1_at--62--6851Chr05:1653664..1653688 (25 bp)
GTTTCGTAGTCGGTTGTATTCACAT
LOC_Os05g03780
Os.8659.1.S1_at--831--9691Chr05:1653645..1653669 (25 bp)
TCACATGGGTGCAGTTTTCAGACAA
LOC_Os05g03780
Os.8659.1.S1_at--927--10511Chr05:1653629..1653653 (25 bp)
TTCAGACAAGTTTTCAGGCACCTGT
LOC_Os05g03780
Os.8659.1.S1_at--723--931Chr05:1653614..1653638 (25 bp)
AGGCACCTGTGAGTACGTCAACCTG
LOC_Os05g03780
Os.8659.1.S1_at--430--4151Chr05:1653568..1653592 (25 bp)
CGCCCAGCCGTACTAGTTTTTATGT
LOC_Os05g03780
Target Sequence 
GACAATCACTCAGGACGCAGACGCTGATCAAATGCTGGACAAGGTGATTGGGTACATCAAGTCTGAGTACAACATCAGCC
ATGTGACCATTCAGATTGAGCGCGAGTAGGCTTGACCGCTTGAGACAGGTAGGTAGTGTTGATGATAGAACGGATCATCT
TCATCTCATCTCATGGGACCAACTTATCAGGAACCTGTTTCACTGGTTTTATGCAGTTACTGTTAGCTCTGCAGTGCAAA
TCAGATCAGCAGAGTCCAACAATTCCTGCAGGTTCATCTGAATGTTAGCTTCTGATGCTGTTTATTACTATAAGTACGTG
TTATTAGTACTATCTTAGTCAATTAGGTGAGTTGATGTTAATCAGTTTCGTAGTCGGTTGTATTCACATGGGTGCAGTTT
TCAGACAAGTTTTCAGGCACCTGTGAGTACGTCAACCTGCCTTCTGCGTCTGTAGTCTAGCGCCCAGCCGTACTAGTTTT
TATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis