Browse Element(s) Details


Os.5212.1.S1_at

Description gb:AK062363.1
DB_XREF= gi:32972381
TID=Os.5212.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-H07, full insert sequence.
FL= gb:AK062363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g055601/11hypothetical protein
LOC_Os11g078701/11Type III restriction enzyme, res subunit family protein, expressed
LOC_Os05g038001/11transposon protein, putative, unclassified
LOC_Os04g332501/11LOB domain protein 12, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009965biological_processleaf morphogenesis
GO:0010016biological_processshoot morphogenesis
GO:0003677molecular_functionDNA binding
GO:0004525molecular_functionribonuclease III activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5212.1.S1_at--656--1671Chr06:27705021..27705045 (25 bp)
AGCCGCCGAACAGTTTGCCCAGAGA
NONE
Os.5212.1.S1_at--842--4211Chr06:27705023..27705047 (25 bp)
CCGCCGAACAGTTTGCCCAGAGAAG
NONE
Os.5212.1.S1_at--1101--2333Chr11:4018180..4018211 (25 bp)
AAAGAGATGGCGTGGCATCCTGACA
LOC_Os11g07870
Os.5212.1.S1_at--260--9936Chr12:3058156..3058191 (25 bp)
TACGTTGACTCAGCCGCTACGTAGG
NONE
Os.5212.1.S1_at--774--7691Chr06:27705170..27705194 (25 bp)
GGGTCAACACTATCGAAGGAGCTAT
NONE
Os.5212.1.S1_at--350--5312Chr06:27705184..27705208 (25 bp)
GAAGGAGCTATTATGACCAGTTTTG
NONE
Os.5212.1.S1_at--843--1051Chr06:27705217..27705241 (25 bp)
AGGGACGGTCGATATCTGATTTTGC
NONE
Os.5212.1.S1_at--1056--1915Chr06:27705221..27705245 (25 bp)
ACGGTCGATATCTGATTTTGCGGTT
NONE
Os.5212.1.S1_at--476--3871Chr06:27705232..27705256 (25 bp)
CTGATTTTGCGGTTGATGGATGATT
NONE
Os.5212.1.S1_at--593--8934Chr06:27705265..27705289 (25 bp)
TGACGACAAGTTTAGGGACCTTCGC
NONE
Os.5212.1.S1_at--1129--10471Chr06:27705304..27705328 (25 bp)
TTAAGAGATGTTTCTTTTTCGAAGC
NONE
Target Sequence 
AGCCGCCGAACAGTTTGCCCAGAGAAGAGGAGAAAGAAGAAGAGAAGAGAGAGAGTATGAGGAGGAAGGGAAAGAGATGG
CGTGGCATCCTGACATGTGGGGTCCACATGGGTCCTACGTTGACTCAGCCGCTACGTAGGATAAAACCGGGGTCAACACT
ATCGAAGGAGCTATTATGACCAGTTTTGATTAGTTAAGGGACGGTCGATATCTGATTTTGCGGTTGATGGATGATTTTGT
AACTTGACGACAAGTTTAGGGACCTTCGCTGTACTTTTTCCTTTTAAGAGATGTTTCTTTTTCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis