Browse Element(s) Details


Os.46468.3.S1_x_at

Description gb:NM_194832.1
DB_XREF= gi:37531023
TID=Os.46468.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0030B02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0030B02.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0553011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46468.3.S1_x_at--201--8411Chr10:2725301..2725325 (25 bp)
GGCGCCATTGCCATGTGAGCTCTGT
LOC_Os10g05530
Os.46468.3.S1_x_at--1009--8431Chr10:2725173..2725197 (25 bp)
GGCCATTGGAGATGCTTGCCGATGT
LOC_Os10g05530
Os.46468.3.S1_x_at--1097--10691Chr10:2725158..2725182 (25 bp)
TTGCCGATGTACGTCTTGTGAGGTT
LOC_Os10g05530
Os.46468.3.S1_x_at--953--2791Chr10:2725128..2725152 (25 bp)
AAGATGGGCTTGGTCTTGCCTTCAT
LOC_Os10g05530
Os.46468.3.S1_x_at--310--2911Chr10:2725102..2725126 (25 bp)
AAGGATTCCACCTTGCACTTGTGGG
LOC_Os10g05530
Os.46468.3.S1_x_at--414--4151Chr10:2725032..2725056 (25 bp)
CGCGCAGGGCCATTGAGCTTGACAA
LOC_Os10g05530
Os.46468.3.S1_x_at--94--5931Chr10:2725018..2725042 (25 bp)
GAGCTTGACAAGTTCCTGCCGATGC
LOC_Os10g05530
Os.46468.3.S1_x_at--1057--8651Chr10:2724923..2724947 (25 bp)
TGTGGTGTTTATACGGACCCTTGCC
LOC_Os10g05530
Os.46468.3.S1_x_at--559--4031Chr10:2724896..2724920 (25 bp)
CGTTTTCCTTGTTTGGCTTGAAGCA
LOC_Os10g05530
Os.46468.3.S1_x_at--838--5351Chr10:2724860..2724884 (25 bp)
GAAGATGTCTGACCCCTTATACATG
LOC_Os10g05530
Os.46468.3.S1_x_at--206--1971Chr10:2724832..2724856 (25 bp)
ACTGTTCACCCATATTCAAGCTTTT
LOC_Os10g05530
Target Sequence 
GGCGCCATTGCCATGTGAGCTCTGTGACACGCCCCCTGCCCTGGTTGGGGAAGCCTCGTATTGGCTTTCTTATGGGGGAC
TCATACTTGAGTTCCAATTTGGCAGCCAAAGTTTAACTCTGATGAAACGGCCATTGGAGATGCTTGCCGATGTACGTCTT
GTGAGGTTGGAAGAAGATGGGCTTGGTCTTGCCTTCATCAAGGATTCCACCTTGCACTTGTGGGCGCGGGAGGTTGCCGA
TGATGGTGCGCCGAAATGGAAATGGATACCGCGCAGGGCCATTGAGCTTGACAAGTTCCTGCCGATGCCAAGGGTGCTCA
CCGGAAAATGGTGTGGTGAAATGTTTGTTTCGATTAGTGGGTTCTCTGAGGATGGAAATGTGGTGTTTATACGGACCCTT
GCCGGCGTTTTCCTTGTTTGGCTTGAAGCATTGAAGTTCAAGAAGATGTCTGACCCCTTATACATGATGACTGTTCACCC
ATATTCAAGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46468.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis