Browse Element(s) Details


OsAffx.30302.1.S1_at

Description tigr:9638.m00468
TID=OsAffx.30302.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative receptor protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0556010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30302.1.S1_at--654--4931Chr10:2745992..2746016 (25 bp)
GCTTGGCGCCGCCAGTGGCCATCTT
LOC_Os10g05560
OsAffx.30302.1.S1_at--476--4231NONE
CCGAGCGACGGCTTCTTGACAACAA
NONE
OsAffx.30302.1.S1_at--969--51Chr10:2745102..2745126 (25 bp)
ATTGACAGGACCAGTTCCTACCAAC
LOC_Os10g05560
OsAffx.30302.1.S1_at--328--3251Chr10:2745081..2745105 (25 bp)
CAACCTCAACAACTTAACCAGGCTT
LOC_Os10g05560
OsAffx.30302.1.S1_at--386--2051Chr10:2745073..2745094 (22 bp)
ACTTAACCAGGCTTACAGAACTCTT
LOC_Os10g05560
OsAffx.30302.1.S1_at--1036--911Chr10:2745007..2745086 (25 bp)
AGGCTTACAGAACTCTTACGCGCTA
LOC_Os10g05560
OsAffx.30302.1.S1_at--151--2151Chr10:2745001..2745080 (25 bp)
ACAGAACTCTTACGCGCTATGCTTT
LOC_Os10g05560
OsAffx.30302.1.S1_at--831--3671Chr10:2744980..2745004 (25 bp)
CTTTCATTTGACACTAGCCATCTTG
LOC_Os10g05560
OsAffx.30302.1.S1_at--668--10751Chr10:2744973..2744997 (25 bp)
TTGACACTAGCCATCTTGCAAACTG
LOC_Os10g05560
OsAffx.30302.1.S1_at--517--11Chr10:2744925..2744949 (25 bp)
ACCTAACTGGAATGAACGAACTCAT
LOC_Os10g05560
OsAffx.30302.1.S1_at--1126--8951Chr10:2744916..2744937 (22 bp)
TGAACGAACTCATGTATTTGTACAT
LOC_Os10g05560
Target Sequence 
GCTTGGCGCCGCCAGTGGCCATCTTGCTGATCTCCGTCGAGCCCTCTGGCGTCTGGGCAGTCGCCGCCGCCATAGCCAAT
CCGGCCTCCACCTGCTGCAAATGTCTTAAGGGGAAGATGGCGACCCCCTTCTCCGAGCGACGGCTTCTTGACAACAACAA
ATTATCCGGAAGCATCCCTTCTACTTTAGGCCTTCTTAATACATTGGAAGTTCTGCGTTTCGATAACAATGCGCAATTGA
CAGGACCAGTTCCTACCAACCTCAACAACTTAACCAGGCTTACAGAACTCTTACGCGCTATGCTTTCATTTGACACTAGC
CATCTTGCAAACTGCAATCTTACTGGTCCACTGCCAGACCTAACTGGAATGAACGAACTCATGTATTTGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30302.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis