Browse Element(s) Details


Os.46468.1.S1_at

Description gb:AK073677.1
DB_XREF= gi:32983700
TID=Os.46468.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0030B02.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050I02, full insert sequence.
FL= gb:AK073677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g055309/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46468.1.S1_at--951--10091NONE
TATGTCCCAAATGCTAATGTCACAG
NONE
Os.46468.1.S1_at--1025--8191Chr10:2722097..2722121 (25 bp)
GGAAGTTCCATTGAAGCCCATGAGA
LOC_Os10g05530
Os.46468.1.S1_at--1057--10371NONE
TTTTCAAGCAGGATACGCCACGGGT
NONE
Os.46468.1.S1_at--754--9951Chr10:2721575..2721599 (25 bp)
TACGCCACGGGTATCTGACATCAGG
LOC_Os10g05530
Os.46468.1.S1_at--879--3471Chr10:2721554..2721578 (25 bp)
CAGGTCTGTGATCTCATGATGTGCA
LOC_Os10g05530
Os.46468.1.S1_at--242--6671Chr10:2721526..2721550 (25 bp)
GTTGCAGTTGCACGTAGCTCAAATC
LOC_Os10g05530
Os.46468.1.S1_at--918--1571Chr10:2721511..2721535 (25 bp)
AGCTCAAATCGTTTGCTCGACTGGC
LOC_Os10g05530
Os.46468.1.S1_at--618--5191Chr10:2721458..2721482 (25 bp)
GAATTGGTTTAAATCCACCCCTGTG
LOC_Os10g05530
Os.46468.1.S1_at--998--3031Chr10:2721424..2721448 (25 bp)
AATCCCTCCTGTTAGCTACCAGGAA
LOC_Os10g05530
Os.46468.1.S1_at--757--2091Chr10:2721390..2721414 (25 bp)
ACATCTGTAATAGGCATGCTGCGGT
LOC_Os10g05530
Os.46468.1.S1_at--708--7811Chr10:2721348..2721372 (25 bp)
GGTCTCTGCATTTTATTTGTCTTAG
LOC_Os10g05530
Target Sequence 
TATGTCCCAAATGCTAATGTCACAGAATAATGACTGGAAGTTCCATTGAAGCCCATGAGATCCAATGTGTTGACAGAGGC
AAGGAAATACTGACGTTTTCAAGCAGGATACGCCACGGGTATCTGACATCAGGTCTGTGATCTCATGATGTGCATGAGTT
GCAGTTGCACGTAGCTCAAATCGTTTGCTCGACTGGCCCCGAAACCCAAGCTGATATTTTGTAAAGAATTGGTTTAAATC
CACCCCTGTGTCAGTCTTCAATCCCTCCTGTTAGCTACCAGGAAAAATGTATTACATCTGTAATAGGCATGCTGCGGTAG
TAGATTAGATATATTGGTCTCTGCATTTTATTTGTCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis