Browse Element(s) Details


OsAffx.30300.1.S1_x_at

Description gb:NM_194830.1
DB_XREF= gi:37531019
TID=OsAffx.30300.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0030B02.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0551011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05470NANA10+2682950..2686575hypothetical protein
LOC_Os10g05480OsAffx.18144.1.S1_at11/1110+2689673..2690497expressed protein
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30300.1.S1_x_at--172--1311Chr10:2704483..2704507 (25 bp)
AGAAGAGGCCAATGTGAAAACGGGA
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--1010--7551Chr10:2704538..2704562 (25 bp)
GGGCCATGGCGAGCGAGACAGCGAT
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--152--6131Chr10:2704590..2704614 (25 bp)
GAGGGCGATGGCAAGGACGTGGGAT
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--126--5071Chr10:2704623..2704647 (25 bp)
GCAGCTTGAGGCATGTGAGGCACTT
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--475--3511Chr10:2704634..2704658 (25 bp)
CATGTGAGGCACTTGTTGAACGGTG
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--1031--10691Chr10:2704649..2704673 (25 bp)
TTGAACGGTGGCAGGATGGCCTCAA
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--837--6671Chr10:2704685..2704709 (25 bp)
GTTGCGAGGAGGTCCTTGGTCCTCT
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--417--991Chr10:2704691..2704715 (25 bp)
AGGAGGTCCTTGGTCCTCTTCAGCG
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--876--10851Chr10:2704700..2704724 (25 bp)
TTGGTCCTCTTCAGCGCCTTGAAGG
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--290--9831Chr10:2704718..2704742 (25 bp)
TTGAAGGCCTCCTCCACGACGGTCA
LOC_Os10g05510
OsAffx.30300.1.S1_x_at--1022--9211Chr10:2704730..2704754 (25 bp)
TCCACGACGGTCACAGCAATAGCAA
LOC_Os10g05510
Target Sequence 
AGAAGAGGCCAATGTGAAAACGGGAGGTTGAAGGAGGAAGACCCGACGAGGTGGAGGGCCATGGCGAGCGAGACAGCGAT
GGAGTTGGGGGTTGTCTTGAGGGAGTGGAGGGCGATGGCAAGGACGTGGGATGGGTCGGGGCAGCTTGAGGCATGTGAGG
CACTTGTTGAACGGTGGCAGGATGGCCTCAAGGTGGGAGAAGGTTGCGAGGAGGTCCTTGGTCCTCTTCAGCGCCTTGAA
GGCCTCCTCCACGACGGTCACAGCAATAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30300.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis