Browse Element(s) Details


Os.25153.1.S1_at

Description gb:CA759092
DB_XREF= gi:25803131
DB_XREF=BR060014B20C03.ab1
CLONE=BR060014B20C03.ab1
TID=Os.25153.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.25153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome P450 (OSJNBa0030B02.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0549011/11Cytochrome P450 family protein, expressed
LOC_Os12g095007/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05440OsAffx.30297.1.S1_at10/1110+2666403..2668479hypothetical protein
LOC_Os10g05440OsAffx.20752.1.S1_at1/1110+2666403..2668479hypothetical protein
LOC_Os10g05450NANA10+2671495..2671787hypothetical protein
LOC_Os10g05460OsAffx.30298.1.S1_x_at11/1110+2675508..2676540hypothetical protein
LOC_Os10g05470NANA10+2682950..2686575hypothetical protein
LOC_Os10g05480OsAffx.18144.1.S1_at11/1110+2689673..2690497expressed protein
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25153.1.S1_at--1110--2052Chr12:4983646..4983670 (25 bp)
ACTTCCCTATCTTCAAGCAGTCATC
LOC_Os12g09500
Os.25153.1.S1_at--917--572Chr12:4983602..4983626 (25 bp)
ATCCAGCCATACCACTGCTAATGTA
LOC_Os12g09500
Os.25153.1.S1_at--844--9752Chr12:4983584..4983608 (25 bp)
TAATGTACAAAGCAGCCGTCCCAGT
LOC_Os12g09500
Os.25153.1.S1_at--191--1472Chr12:4983574..4983598 (25 bp)
AGCAGCCGTCCCAGTTGAAATACAA
LOC_Os12g09500
Os.25153.1.S1_at--522--6811Chr10:2693563..2693587 (25 bp)
GTTTATACCAGAGAGATTCCTACAA
LOC_Os10g05490
Os.25153.1.S1_at--755--2512Chr12:4983401..4983700 (25 bp)
AACTTATTCCATTCAGTGCCGGACG
LOC_Os12g09500
Os.25153.1.S1_at--65--8092Chr12:4983381..4983405 (25 bp)
GGACGACGTTTCTGCCTCGGATATC
LOC_Os12g09500
Os.25153.1.S1_at--1033--3011Chr10:2693443..2693467 (25 bp)
AATGCTGCATGTTATGCTTGCCTCG
LOC_Os10g05490
Os.25153.1.S1_at--792--10691Chr10:2693426..2693450 (25 bp)
TTGCCTCGCTAGTTCATCAGTTTCA
LOC_Os10g05490
Os.25153.1.S1_at--934--2572Chr12:4983273..4983297 (25 bp)
AACGGTGGCGTAGACATGGCAGAAA
LOC_Os12g09500
Os.25153.1.S1_at--772--5211Chr10:2693342..2693366 (25 bp)
GAATAACACTGTCTATGGCGACCCC
LOC_Os10g05490
Target Sequence 
ACTTCCCTATCTTCAAGCAGTCATCAAGGAAACACACAGGCTACATCCAGCCATACCACTGCTAATGTACAAAGCAGCCG
TCCCAGTTGAAATACAAGGGTATAAAATCCCCAAAGAAACCACTGTGATAGTAAATACATGGGCAATTCATCAGAATTCA
GAGGTTTGGATTGAACCAGACAAGTTTATACCAGAGAGATTCCTACAAAAGGAGATCAGTTTGTCATCAGGTAGTACCAA
CATNGAACTTATTCCATTCAGTGCCGGACGACGTTTCTGCCTCGGATATCCNGTAGCAAATAGAATGCTGCATGTTATGC
TTGCCTCGCTAGTTCATCAGTTTCAGTGGACACTGCCTGAAGTAGTGAAGAAGAACGGTGGCGTAGACATGGCAGAAAAG
TTTGGAATAACACTGTCTATGGCGACCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis