Browse Element(s) Details


OsAffx.30298.1.S1_x_at

Description tigr:9638.m00457
TID=OsAffx.30298.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0546011/11hypothetical protein
LOC_Os02g394601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05410OsAffx.20752.1.S1_at11/1110+2651213..2653297hypothetical protein
LOC_Os10g05420NANA10+2658287..2659388hypothetical protein
LOC_Os10g05430NANA10+2660547..2662514hypothetical protein
LOC_Os10g05440OsAffx.30297.1.S1_at10/1110+2666403..2668479hypothetical protein
LOC_Os10g05440OsAffx.20752.1.S1_at1/1110+2666403..2668479hypothetical protein
LOC_Os10g05450NANA10+2671495..2671787hypothetical protein
LOC_Os10g05460OsAffx.30298.1.S1_x_at11/1110+2675508..2676540hypothetical protein
LOC_Os10g05470NANA10+2682950..2686575hypothetical protein
LOC_Os10g05480OsAffx.18144.1.S1_at11/1110+2689673..2690497expressed protein
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30298.1.S1_x_at--688--4571Chr10:2676082..2676106 (25 bp)
GCGCGGCCGAGGACCGACGGAACCT
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--359--10091Chr10:2676026..2676050 (25 bp)
TAGGAGGCGCGGAAAGCCGGCCGAA
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--980--491Chr10:2676000..2676024 (25 bp)
ATCGGGGAAATTAGTGGAGCTCACC
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--304--5451Chr10:2675863..2675987 (25 bp)
GAACCCGGCGGCTCGACACAGCTGG
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--969--3931Chr10:2675858..2675881 (24 bp)
CGGCGGCTCGACACAGCTGGAGACA
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--362--3931Chr10:2675855..2675879 (25 bp)
CGGCTCGACACAGCTGGAGACAGCA
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--524--3911Chr10:2675842..2675866 (25 bp)
CTGGAGACAGCAAACACGACGGCGA
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--518--2451Chr10:2675830..2675854 (25 bp)
AACACGACGGCGATCTCGGGTTGGT
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--157--5911Chr10:2675753..2675777 (25 bp)
GAGCTTGGCGCAGCGGTGCCGACGG
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--393--4411Chr10:2675600..2675624 (25 bp)
GCCGGGGTAGACTTCGACAATGGAT
LOC_Os10g05460
OsAffx.30298.1.S1_x_at--127--9132Chr10:2675551..2675575 (25 bp)
TGCGGCACGACGCAGCGAAGCTATT
LOC_Os10g05460
Target Sequence 
GCGCGGCCGAGGACCGACGGAACCTGGGGAACAAGGAGGAGGGACTAGGGGAGGAATAGGAGGCGCGGAAAGCCGGCCGA
AGATCGGGGAAATTAGTGGAGCTCACCGGCGCGGGAAGGGAACCCGGCGGCTCGACACAGCTGGAGACAGCAAACACGAC
GGCGATCTCGGGTTGGTGGTGGAAGCGGAGCTCCGGCACTGGAATGGGGAAATAGTGGAGGCCGAGGTGGAGCTTGGCGC
AGCGGTGCCGACGGCGGTGGCGGGGCAGCGCGACGGCGACGGGAACGGCGGCGGTGGGCGGCTGAACGACGCCGGCGAGC
GGCGGAGGTTGGTGGTGCGGTGGGGCGGCTTTCCGGTGGCTATTGGGGAAAATGGAGCGGCTGCCGGGGTAGACTTCGAC
AATGGATTGGGAAGGGGAGCGGTGGACGGGGTGCGGCACGACGCAGCGAAGCTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30298.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis