Browse Element(s) Details


OsAffx.30297.1.S1_at

Description tigr:9638.m00455
TID=OsAffx.30297.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0544010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05390OsAffx.2425.1.S1_at1/1110+2641495..2642555hypothetical protein
LOC_Os10g05400OsAffx.30295.1.S1_at11/1110+2646459..2648411Protein kinase domain containing protein
LOC_Os10g05410OsAffx.20752.1.S1_at11/1110+2651213..2653297hypothetical protein
LOC_Os10g05420NANA10+2658287..2659388hypothetical protein
LOC_Os10g05430NANA10+2660547..2662514hypothetical protein
LOC_Os10g05440OsAffx.30297.1.S1_at10/1110+2666403..2668479hypothetical protein
LOC_Os10g05440OsAffx.20752.1.S1_at1/1110+2666403..2668479hypothetical protein
LOC_Os10g05450NANA10+2671495..2671787hypothetical protein
LOC_Os10g05460OsAffx.30298.1.S1_x_at11/1110+2675508..2676540hypothetical protein
LOC_Os10g05470NANA10+2682950..2686575hypothetical protein
LOC_Os10g05480OsAffx.18144.1.S1_at11/1110+2689673..2690497expressed protein
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30297.1.S1_at--97--5311Chr10:2667858..2667882 (25 bp)
GAAGGAATCTGTTCATAACTGCCAT
LOC_Os10g05440
OsAffx.30297.1.S1_at--652--6131Chr10:2667893..2667917 (25 bp)
GAGGGCATCCTTGGGAACGAACCAC
LOC_Os10g05440
OsAffx.30297.1.S1_at--1153--3331Chr10:2667915..2667939 (25 bp)
CACGTGAGATCCAGGGTCTTGCACA
LOC_Os10g05440
OsAffx.30297.1.S1_at--670--7511Chr10:2667956..2667980 (25 bp)
GTGGAGTCCACTAATGGTGACCCTA
LOC_Os10g05440
OsAffx.30297.1.S1_at--79--7771Chr10:2667971..2667995 (25 bp)
GGTGACCCTAGTTTTATCCGTGCGA
LOC_Os10g05440
OsAffx.30297.1.S1_at--332--4611NONE
GCGACGCTTGTGCACTTTCTAAGAT
NONE
OsAffx.30297.1.S1_at--910--9851Chr10:2668131..2668155 (25 bp)
TACAGGTTGGGAGTTGCTCACCTTT
LOC_Os10g05440
OsAffx.30297.1.S1_at--861--9671Chr10:2668148..2668172 (25 bp)
TCACCTTTGTCTGGCTCTTGATGTT
LOC_Os10g05440
OsAffx.30297.1.S1_at--756--6351Chr10:2668252..2668276 (25 bp)
GATGCGCCATCGTCCTCTAATGAGA
LOC_Os10g05440
OsAffx.30297.1.S1_at--808--3831Chr10:2668331..2668355 (25 bp)
CTGCTGCTCCATTGTCTTCTGATGA
LOC_Os10g05440
OsAffx.30297.1.S1_at--105--531Chr10:2668425..2668449 (25 bp)
ATCGACTTCGCCTGACATCATTGTT
LOC_Os10g05440
Target Sequence 
GAAGGAATCTGTTCATAACTGCCATTCATGAGTTGGAGGGCATCCTTGGGAACGAACCACGTGAGATCCAGGGTCTTGCA
CAGAAGATAATTGTCAATGTGGAGTCCACTAATGGTGACCCTAGTTTTATCCGTGCGACGCTTGTGCACTTTCTAAGATG
TAGAGGGTACCTACATGCCAAGAGTCTAGGTACAGGTTGGGAGTTGCTCACCTTTGTCTGGCTCTTGATGTTATACATGG
GGATGGAGCCCTTGGTGGAGAAATTACAAAGGGCGGAGTTTTCAAGTGTAATAGGAAGTGGAACCACCGCTGATGCGCCA
TCGTCCTCTAATGAGACCTTGGCAGAGAGGGAACCGAAGACTGAGGTTCCAAATGGAGGAGGCATCAGCGCTGCTGCTCC
ATTGTCTTCTGATGAGACCTTGGCAGAATGGAACCAGAAGATTAAAGCTCCAAGTGGAGATGAAGGAAACATCGGTGATG
TGCCATCGACTTCGCCTGACATCATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis