Browse Element(s) Details


Os.46802.1.S1_at

Description gb:AK110870.1
DB_XREF= gi:32996079
TID=Os.46802.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0030B02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E06, full insert sequence.
FL= gb:AK110870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0552011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05490Os.25153.1.S1_at11/1110+2693261..2696062Cytochrome P450 family protein, expressed
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46802.1.S1_at--558--791Chr10:2717383..2717407 (25 bp)
ATGTGGTGTTTATTGGGACCCCTGC
LOC_Os10g05520
Os.46802.1.S1_at--683--10351Chr10:2717353..2717377 (25 bp)
TTTTCTTGGTTGAGCTTGACACGTT
LOC_Os10g05520
Os.46802.1.S1_at--721--2891Chr10:2717318..2717342 (25 bp)
AAGGTGACTGATGGTTCCCTACTCA
LOC_Os10g05520
Os.46802.1.S1_at--179--9911Chr10:2717299..2717323 (25 bp)
TACTCATCAAGACTGTTCATCCCTA
LOC_Os10g05520
Os.46802.1.S1_at--723--431Chr10:2716226..2716250 (25 bp)
ATCTTCCGCGCCAAGTTCAGATGGA
LOC_Os10g05520
Os.46802.1.S1_at--822--3671Chr10:2716092..2716116 (25 bp)
CTTTCTGGATGCTATTTCTCGGTAC
LOC_Os10g05520
Os.46802.1.S1_at--695--771Chr10:2715989..2716013 (25 bp)
ATGTGAACAACCTGGCTGATGCTTG
LOC_Os10g05520
Os.46802.1.S1_at--556--631Chr10:2715971..2715995 (25 bp)
ATGCTTGACCTGTTTGCTGCTGAAA
LOC_Os10g05520
Os.46802.1.S1_at--94--7491Chr10:2715940..2715964 (25 bp)
GTGGGCGTTATGAACCTTGTAGTCT
LOC_Os10g05520
Os.46802.1.S1_at--692--6931Chr10:2715922..2715946 (25 bp)
GTAGTCTGTTTGACTGTTTCCTTCA
LOC_Os10g05520
Os.46802.1.S1_at--261--8771Chr10:2715908..2715932 (25 bp)
TGTTTCCTTCAGTGGTCGGTTTGAA
LOC_Os10g05520
Target Sequence 
ATGTGGTGTTTATTGGGACCCCTGCTGGCATTTTCTTGGTTGAGCTTGACACGTTGAAGTTCAAGAAGGTGACTGATGGT
TCCCTACTCATCAAGACTGTTCATCCCTATGAGAGCTTTTATTATGTTCCAAATGAAAAAGGAGGAAAACAGGAGAGTGC
TATAGTGGGGAACCAGGTTTCTGAGGCAGGTGGCAAGTGAGATCTTCCGCGCCAAGTTCAGATGGAGACTGTGCTCAGGA
CAGTTGGAAGGATGAACACAAAGGAGGATGTCACTATATGTTGGGAGAATTCACCAGGTCTTTTCTAGTTTTAAGTTCTG
TTTAGCTGATCATCACTTTCTGGATGCTATTTCTCGGTACATGTTGGTTGTAGTCTTGTGCTTTGAAACTCAACTTTTGT
TGTAAACCAGCGGTTGGTATACATGGTAGGATGGCACCATGTGAACAACCTGGCTGATGCTTGACCTGTTTGCTGCTGAA
AGGTGGTGTGGGCGTTATGAACCTTGTAGTCTGTTTGACTGTTTCCTTCAGTGGTCGGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis