Browse Element(s) Details


Os.46894.1.S1_at

Description gb:AK103298.1
DB_XREF= gi:32988507
TID=Os.46894.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46894 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0030B02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125B11, full insert sequence.
FL= gb:AK103298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0554011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05500OsAffx.20750.1.S1_at10/1110+2700246..2703045F-box domain containing protein
LOC_Os10g05510OsAffx.30300.1.S1_x_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05510OsAffx.30300.1.S1_at11/1110+2704438..2704791hypothetical protein
LOC_Os10g05520Os.46802.1.S1_at11/1110+2715899..2718457F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.3.S1_x_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.2.S1_at11/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05530Os.46468.1.S1_at9/1110+2721206..2726013F-box domain containing protein, expressed
LOC_Os10g05540Os.46894.1.S1_at11/1110+2727508..2732550F-box domain containing protein, expressed
LOC_Os10g05550NANA10+2736672..2737287hypothetical protein
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46894.1.S1_at--581--811Chr10:2731599..2731623 (25 bp)
ATGGTGCGTCGCAATGGATTCCGCG
LOC_Os10g05540
Os.46894.1.S1_at--37--6591Chr10:2731583..2731607 (25 bp)
GATTCCGCGCAGAGCCATTGAGCTG
LOC_Os10g05540
Os.46894.1.S1_at--843--51Chr10:2731567..2731591 (25 bp)
ATTGAGCTGGACATGATCCTGCCGC
LOC_Os10g05540
Os.46894.1.S1_at--528--7291Chr10:2731529..2731553 (25 bp)
GTGCCGTGCGATGCCTATTTGGATA
LOC_Os10g05540
Os.46894.1.S1_at--580--9931Chr10:2731470..2731494 (25 bp)
TACGGACTGTTGCTGGAGTTTTCCT
LOC_Os10g05540
Os.46894.1.S1_at--140--6811Chr10:2731453..2731477 (25 bp)
GTTTTCCTGGTTTGGCTTGATACAT
LOC_Os10g05540
Os.46894.1.S1_at--879--7451Chr10:2731414..2731438 (25 bp)
GTGTCTGGCTCCTTACTCATGAAGA
LOC_Os10g05540
Os.46894.1.S1_at--1156--8291Chr10:2727711..2727735 (25 bp)
GGCTTTAGAATCTCTTGGCTGCAGT
LOC_Os10g05540
Os.46894.1.S1_at--1120--7951Chr10:2727677..2727701 (25 bp)
GGATCAGTTATGCATCTGCGCTGCT
LOC_Os10g05540
Os.46894.1.S1_at--515--5311Chr10:2727629..2727653 (25 bp)
GAAGGATCACTCCATGTTTCAATGA
LOC_Os10g05540
Os.46894.1.S1_at--922--2231Chr10:2727512..2727536 (25 bp)
AAATTGACATTTTCTCGCCTTTGGA
LOC_Os10g05540
Target Sequence 
ATGGTGCGTCGCAATGGATTCCGCGCAGAGCCATTGAGCTGGACATGATCCTGCCGCTGGAGGGCTATCGGTGCCGTGCG
ATGCCTATTTGGATATGTGGATTTGCTGAAGATGGAGATGTGGTGTTTATACGGACTGTTGCTGGAGTTTTCCTGGTTTG
GCTTGATACATTGAAATTCAAGAAGGTGTCTGGCTCCTTACTCATGAAGACTGTTTACTCCTATNCTAGCTTTTATGTTC
CAAATGGNNNNNNNNNNNANNNNNCNNNNNNNNNNNTGNNATCCCATGTGTTGATAGAAGCAAGGAACTACTGACATTTT
CAAGCAGATGATGGTGCAAATCATGGAATCGGATGGCTTTAGAATCTCTTGGCTGCAGTGGTGTTGAAGGATCAGTTATG
CATCTGCGCTGCTTTCTCCTGATTGCAGAGGGTGTTGAAGGATCACTCCATGTTTCAATGAAAAGGTTAAAGTGGCATTT
TGTTGTCGTTGGAGATAACAGCTACTAATACTCCAACGCATATCAGATTACTCCATAATTCAATAAAAAGGCGAAATTGA
CATTTTCTCGCCTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis