Browse Element(s) Details


Os.23808.3.S1_x_at

Description gb:AK120934.1
DB_XREF= gi:37990557
TID=Os.23808.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036J15, full insert sequence.
FL= gb:AK120934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g037509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g03720Os.38764.1.S1_x_at5/115+1603105..1608746retrotransposon protein, putative, unclassified
LOC_Os05g03720Os.54151.1.S1_x_at4/115+1603105..1608746retrotransposon protein, putative, unclassified
LOC_Os05g03730NANA5+1615497..1615997retrotransposon protein, putative, unclassified
LOC_Os05g03740NANA5+1621601..1622602hypothetical protein
LOC_Os05g03750Os.23808.1.S1_x_at11/115+1630055..1632403expressed protein
LOC_Os05g03750Os.23808.3.S1_x_at9/115+1630055..1632403expressed protein
LOC_Os05g03760Os.11774.1.S1_s_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03760Os.11774.1.S1_x_at11/115+1640048..1642461Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g03770Os.55734.1.S1_at11/115+1644535..1646940expressed protein
LOC_Os05g03780Os.8659.1.S1_at11/115+1653517..1657080cation diffusion facilitator family transporter containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23808.3.S1_x_at--437--10611NONE
TTCGGTCTCGCGCATGGCAGGTTTC
NONE
Os.23808.3.S1_x_at--655--1131Chr05:1631447..1631471 (25 bp)
AGTGCTCTGATGCTGTTCTTCTACT
LOC_Os05g03750
Os.23808.3.S1_x_at--752--10551NONE
TTCTACTTCGCGTCCAACTGGGTGG
NONE
Os.23808.3.S1_x_at--778--1951Chr05:1631481..1631505 (25 bp)
ACTGGGTGGTGCCTGAGTTAATCAT
LOC_Os05g03750
Os.23808.3.S1_x_at--400--9611Chr05:1631502..1631526 (25 bp)
TCATGAAGGATTTGCAGGAGCCCAA
LOC_Os05g03750
Os.23808.3.S1_x_at--799--1451Chr05:1631542..1631566 (25 bp)
AGAAGAAGCTGCCTCTTCACCGGCA
LOC_Os05g03750
Os.23808.3.S1_x_at--325--8391Chr05:1631585..1631609 (25 bp)
GGCGACGGCCAACCTGAAGCTAAAA
LOC_Os05g03750
Os.23808.3.S1_x_at--88--4791Chr05:1631648..1631672 (25 bp)
GCTGCCATGAAGGTGTAGTGCACAC
LOC_Os05g03750
Os.23808.3.S1_x_at--677--631Chr05:1631690..1631714 (25 bp)
ATGCATGCTAGTATGTTATTGCCCC
LOC_Os05g03750
Os.23808.3.S1_x_at--772--10051Chr05:1631820..1631844 (25 bp)
TAGTATGTACTCATCATGTTCTGAA
LOC_Os05g03750
Os.23808.3.S1_x_at--198--9631Chr05:1631833..1631857 (25 bp)
TCATGTTCTGAATCTGTGAGCCATT
LOC_Os05g03750
Target Sequence 
TTCGGTCTCGCGCATGGCAGGTTTCGGGGCGGCGAGGTGGTCGGGGCGGCGGCTGCGGGCGCTGCCGCCGCAGGTGAGCG
AGTTCCTCAGCCCCGAGCAGCTGGTCCCCGGCTCGCCGGCCGACACCGGCGACGTCTCCTCCCTCATCCCAATCAGTGCT
CTGATGCTGTTCTTCTACTTCGCGTCCAACTGGGTGGTGCCTGAGTTAATCATGAAGGATTTGCAGGAGCCCAAAAAGGC
TGAAGAATCAGAAGAAGCTGCCTCTTCACCGGCAGCAACCATGTCGGTCGCCGGCGACGGCCAACCTGAAGCTAAAATCA
GACTCAAGGTGAAGAAGACAAAGAAGAACAAGAAGGCTGCCATGAAGGTGTAGTGCACACAAACATGCATCAATATAATG
CATGCTAGTATGTTATTGCCCCCCTCATGATGATAATAGATAGCATCATCAGTCAAAGATCACACTAAAGTGCTAATTAT
AATCAAAGAGAAGATTAATTCTCCATCAGAAGGGGGGGGCTTACATATAGTATGTACTCATCATGTTCTGAATCTGTGAG
CCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23808.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis