Browse Element(s) Details


OsAffx.24028.1.S1_at

Description tigr:9629.m07269
TID=OsAffx.24028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7340011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73344Os.27691.2.S1_x_at1/111+42837861..42844028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73356NANA1+42844884..42845510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73370OsAffx.21929.1.S1_at11/111+42853759..42854229LRK14, putative
LOC_Os01g73370OsAffx.21929.1.S1_x_at10/111+42853759..42854229LRK14, putative
LOC_Os01g73380OsAffx.30226.2.S1_s_at7/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_x_at5/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.24587.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.2.S1_x_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.19052.1.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73390OsAffx.24027.1.S1_at11/111+42859099..42860801hypothetical protein
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24028.1.S1_at--241--9791Chr01:42864567..42864591 (25 bp)
TAAGCACATGTGACCCCAAAATTCG
LOC_Os01g73400
OsAffx.24028.1.S1_at--510--2111Chr01:42864572..42864596 (25 bp)
ACATGTGACCCCAAAATTCGGATTT
LOC_Os01g73400
OsAffx.24028.1.S1_at--1016--8611Chr01:42864575..42864599 (25 bp)
TGTGACCCCAAAATTCGGATTTCGT
LOC_Os01g73400
OsAffx.24028.1.S1_at--401--2431Chr01:42864584..42864608 (25 bp)
AAAATTCGGATTTCGTACAAGCGTG
LOC_Os01g73400
OsAffx.24028.1.S1_at--918--10611Chr01:42864588..42864612 (25 bp)
TTCGGATTTCGTACAAGCGTGTGAA
LOC_Os01g73400
OsAffx.24028.1.S1_at--310--2211Chr01:42864600..42864624 (25 bp)
ACAAGCGTGTGAAGCTTTTGGTCTT
LOC_Os01g73400
OsAffx.24028.1.S1_at--315--5391Chr01:42864610..42864634 (25 bp)
GAAGCTTTTGGTCTTGTTGTTCAAC
LOC_Os01g73400
OsAffx.24028.1.S1_at--697--4891Chr01:42864613..42864637 (25 bp)
GCTTTTGGTCTTGTTGTTCAACAAC
LOC_Os01g73400
OsAffx.24028.1.S1_at--678--6631Chr01:42864625..42864649 (25 bp)
GTTGTTCAACAACCAAATAATGATA
LOC_Os01g73400
OsAffx.24028.1.S1_at--715--711Chr01:42864644..42864759 (25 bp)
ATGATACTACTAGCTCAAGACTCTG
LOC_Os01g73400
OsAffx.24028.1.S1_at--878--9891Chr01:42864651..42864766 (25 bp)
TACTAGCTCAAGACTCTGACCAAAA
LOC_Os01g73400
Target Sequence 
TAAGCACATGTGACCCCAAAATTCGGATTTCGTACAAGCGTGTGAAGCTTTTGGTCTTGTTGTTCAACAACCAAATAATG
ATACTACTAGCTCAAGACTCTGACCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis