Browse Element(s) Details


OsAffx.24027.1.S1_at

Description tigr:9629.m07268
TID=OsAffx.24027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lectin (probable mannose binding), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7339011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73332NANA1+42835336..42835962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73344Os.27691.2.S1_x_at1/111+42837861..42844028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73356NANA1+42844884..42845510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73370OsAffx.21929.1.S1_at11/111+42853759..42854229LRK14, putative
LOC_Os01g73370OsAffx.21929.1.S1_x_at10/111+42853759..42854229LRK14, putative
LOC_Os01g73380OsAffx.30226.2.S1_s_at7/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_x_at5/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.24587.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.2.S1_x_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.19052.1.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73390OsAffx.24027.1.S1_at11/111+42859099..42860801hypothetical protein
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24027.1.S1_at--388--911Chr01:42859655..42859679 (25 bp)
AGGCGGCGTGCATGTCAGACTGCTT
LOC_Os01g73390
OsAffx.24027.1.S1_at--675--9051Chr01:42859647..42859671 (25 bp)
TGCATGTCAGACTGCTTCTGCGTCG
LOC_Os01g73390
OsAffx.24027.1.S1_at--1090--9091Chr01:42859616..42859640 (25 bp)
TGCTCGACACCAACGACGGCACGTG
LOC_Os01g73390
OsAffx.24027.1.S1_at--212--5751Chr01:42859602..42859626 (25 bp)
GACGGCACGTGCACGAAGCAGCAGC
LOC_Os01g73390
OsAffx.24027.1.S1_at--1159--1511Chr01:42859586..42859610 (25 bp)
AGCAGCAGCTCCCACTTCGATACGG
LOC_Os01g73390
OsAffx.24027.1.S1_at--925--4691Chr01:42859553..42859577 (25 bp)
GCGGCGGCTACACGATGTTCGTCAA
LOC_Os01g73390
OsAffx.24027.1.S1_at--243--4831Chr01:42859547..42859571 (25 bp)
GCTACACGATGTTCGTCAAGACCGG
LOC_Os01g73390
OsAffx.24027.1.S1_at--417--8331Chr01:42859427..42859451 (25 bp)
GGCTCCTGACGTTCGTCGCGCTGTG
LOC_Os01g73390
OsAffx.24027.1.S1_at--796--4571Chr01:42859386..42859410 (25 bp)
GCGCGGCTGCTCTGGCTGAACCAGA
LOC_Os01g73390
OsAffx.24027.1.S1_at--921--9291Chr01:42859301..42859325 (25 bp)
TCCGCTCGTACAGCTACGAGGAGCT
LOC_Os01g73390
OsAffx.24027.1.S1_at--301--8071Chr01:42859276..42859300 (25 bp)
GGAGCACGCGACGTACAGCTTCCGA
LOC_Os01g73390
Target Sequence 
AGGCGGCGTGCATGTCAGACTGCTTCTGCGTCGCCGCGCTGCTCGACACCAACGACGGCACGTGCACGAAGCAGCAGCTC
CCACTTCGATACGGCCGCGCGGGCGGCGGCTACACGATGTTCGTCAAGACCGGTGGAGCGGCGAGCCCGGCGCTCGGCGG
CGGCGGCGGCGGCAACCACCACCACCACCGCCTCAGGCGAGCGAGCACCGTCGCGCTGGTCTGCGTCGGGCTCCTGACGT
TCGTCGCGCTGTGCGCCCTCCTCGCGTCGGCGCGGCTGCTCTGGCTGAACCAGAGGATGGTGCGACGGCGCGTCGCGCTC
GCCGACGCCGAGGCCCTGGACGAGGAGGCGCCGCTCCGCTCGTACAGCTACGAGGAGCTGGAGCACGCGACGTACAGCTT
CCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis