Browse Element(s) Details


OsAffx.21929.1.S1_x_at

Description gb:NM_189387.1
DB_XREF= gi:34905857
GEN=P0483G10.33
TID=OsAffx.21929.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0483G10.33 (P0483G10.33), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7337010/11LRK14, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73320OsAffx.22848.4.S1_at2/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.3.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73320OsAffx.22848.4.S1_x_at1/111+42824703..42830661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73332NANA1+42835336..42835962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73344Os.27691.2.S1_x_at1/111+42837861..42844028retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73356NANA1+42844884..42845510retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g73370OsAffx.21929.1.S1_at11/111+42853759..42854229LRK14, putative
LOC_Os01g73370OsAffx.21929.1.S1_x_at10/111+42853759..42854229LRK14, putative
LOC_Os01g73380OsAffx.30226.2.S1_s_at7/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_x_at5/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.24587.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.2.S1_x_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.19052.1.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73390OsAffx.24027.1.S1_at11/111+42859099..42860801hypothetical protein
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21929.1.S1_x_at--270--9931Chr01:42854103..42854127 (25 bp)
TACCTCGCGTCGGAGTGGTACCGCG
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--770--3931Chr01:42854038..42854062 (25 bp)
CGGCGTGGTGCTGCTCGAGACGGTG
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--932--2771Chr01:42853926..42853950 (25 bp)
AAGAGCGAGGCAAAGAGCGCCATGA
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--218--3292Chr03:34546957..34546976 (20 bp)
CAAAGAGCGCCATGAGCAGCGACGA
NONE
OsAffx.21929.1.S1_x_at--990--4331Chr01:42853850..42853874 (25 bp)
CCATGTGGTGCGTCCAAGCGGAGCC
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--832--2671Chr01:42853835..42853859 (25 bp)
AAGCGGAGCCGCAGTCTCGGCCATC
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--808--1151Chr01:42853823..42853847 (25 bp)
AGTCTCGGCCATCCATGAATGGTGT
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--1068--8431Chr01:42853817..42853841 (25 bp)
GGCCATCCATGAATGGTGTCATCTT
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--730--7731Chr01:42853803..42853827 (25 bp)
GGTGTCATCTTGATGCTGCAAGGCC
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--276--9591Chr01:42853796..42853820 (25 bp)
TCTTGATGCTGCAAGGCCGTTTGGA
LOC_Os01g73370
OsAffx.21929.1.S1_x_at--609--9272Chr02:2673864..2673885 (22 bp)
TCCTGCACCGCGAGGACGACGTTGG
NONE
Target Sequence 
TACCTCGCGTCGGAGTGGTACCGCGGCGCCGGCCCGGTGATGGTGAAGGCCGACGTGTACAGCTACGGCGTGGTGCTGCT
CGAGACGGTGGCGTGCAGGAGGAGCATGGAGATGGAGGAGGCCGCCGGCGAGGAGGAGCGGACGCTGGCGGAGTGGGCGT
ACGAGTGGCTGCTGGTGAAGAGCGAGGCAAAGAGCGCCATGAGCAGCGACGAGACGGTGGAGGCGGCAGAGGTGGAGAGG
GTGGTGAGGGTGGCCATGTGGTGCGTCCAAGCGGAGCCGCAGTCTCGGCCATCCATGAATGGTGTCATCTTGATGCTGCA
AGGCCGTTTGGAGNNNCNANNNCNNNNNNNNNNNNCNGNNNCNTNNNNNCGGTATCTCTGCGGCGAGCACGTCCTGCACC
GCGAGGACGACGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21929.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis