Browse Element(s) Details


Os.15641.1.S1_at

Description gb:AK108889.1
DB_XREF= gi:32994098
TID=Os.15641.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.17 (P0458E05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-152-E03, full insert sequence.
FL= gb:AK108889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7350011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15641.1.S1_at--532--4211Chr01:42914705..42914818 (25 bp)
CCGCGCCCGGAAAAGTCGAGATACT
LOC_Os01g73500
Os.15641.1.S1_at--903--6031Chr01:42914688..42914711 (24 bp)
GAGATACTGATCGACAACAAGCAGC
LOC_Os01g73500
Os.15641.1.S1_at--679--2211Chr01:42914672..42914696 (25 bp)
ACAAGCAGCACTACAAGTTCCTGGG
LOC_Os01g73500
Os.15641.1.S1_at--748--5411Chr01:42914566..42914590 (25 bp)
GAAGCCTCTCAAGAACAGGGACACG
LOC_Os01g73500
Os.15641.1.S1_at--656--2111Chr01:42914552..42914576 (25 bp)
ACAGGGACACGGTGAGCTTCCCGGT
LOC_Os01g73500
Os.15641.1.S1_at--656--4751Chr01:42914465..42914489 (25 bp)
GCTGCGGCAAGGACCCATAGGCCAT
LOC_Os01g73500
Os.15641.1.S1_at--269--5651Chr01:42914433..42914457 (25 bp)
GACAGCCCTACAAGTGGACAATCTC
LOC_Os01g73500
Os.15641.1.S1_at--393--5612Chr02:22234842..22234861 (20 bp)
GACAATCTCGCTACCCGTATAAAAA
NONE
Os.15641.1.S1_at--69--1071Chr01:42914284..42914308 (25 bp)
AGGGAGTACATTTTAGGTGGACTGT
LOC_Os01g73500
Os.15641.1.S1_at--712--10371Chr01:42914225..42914249 (25 bp)
TTTTTTGCCTCATATCACTATTATG
LOC_Os01g73500
Os.15641.1.S1_at--993--2011Chr01:42914183..42914207 (25 bp)
ACTACAGTACAATGTTTGCTTTACA
LOC_Os01g73500
Target Sequence 
CCGCGCCCGGAAAAGTCGAGATACTGATCGACAACAAGCAGCACTACAAGTTCCTGGGCAGGGCCATCGACCTGGCGTCG
CTCATCACGCTCGACGTCGAGGACGGCAAGGTTGTGAAGCACCAAGACTGGTGGGACAAGAAGCCTCTCAAGAACAGGGA
CACGGTGAGCTTCCCGGTGGTCGGCCGGCTGGCGGAGGCGACCCGCCGCGGCGCCATGCTGCTCACTCACGCTNTCATGG
GCTGCGGCAAGGACCCATAGGCCATCGCCTCCGACAGCCCTACAAGTGGACAATCTCGCTACCCGTATAAAAATATGTTT
AATATAGTTTATTCTCTATTCACTAGTACTACCTCCTTTCCTAAATATATAANGTTGGTTTGTTTAATTTTAAANGAATC
AACGTCATACAAATAACACNGGAGGGAGTACATTTTAGGTGGACTGTAAATTAAAGATTGTACTCCAGATGAGTATGACG
NNTTTTTTTGCCTCATATCACTATTATGTAATATCATTTGTATCTACTACAGTACAATGTTTGCTTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis