Browse Element(s) Details


Os.33788.1.S1_at

Description gb:AK058564.1
DB_XREF= gi:32968582
TID=Os.33788.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.33788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.22 (P0458E05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E01, full insert sequence.
FL= gb:AK058564.1 gb:AK098935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7354011/11YGGT family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33788.1.S1_at--424--3411Chr01:42941194..42941218 (25 bp)
CAGCAGCGAGGGTCACACGGCCAGC
LOC_Os01g73540
Os.33788.1.S1_at--866--3831Chr01:42941106..42941130 (25 bp)
CTGCTGCACCGGAGCGTCAGTGGCA
LOC_Os01g73540
Os.33788.1.S1_at--428--531Chr01:42940963..42940987 (25 bp)
ATCGCCCGGATCGTGATGTCGTGGT
LOC_Os01g73540
Os.33788.1.S1_at--996--7391Chr01:42940951..42940975 (25 bp)
GTGATGTCGTGGTACCCGAGGCTCC
LOC_Os01g73540
Os.33788.1.S1_at--538--9451Chr01:42940779..42940803 (25 bp)
TCGGCCCACAGGGATTGCTCGTGCT
LOC_Os01g73540
Os.33788.1.S1_at--270--9251Chr01:42940755..42940779 (25 bp)
TCCTCTCTCAGCAAAAGCCTTAGCA
LOC_Os01g73540
Os.33788.1.S1_at--1009--4411Chr01:42940739..42940763 (25 bp)
GCCTTAGCAAACTCTGTTTCGTTCG
LOC_Os01g73540
Os.33788.1.S1_at--629--6711Chr01:42940719..42940743 (25 bp)
GTTCGTTCGTTTCCATGTGAAAAGT
LOC_Os01g73540
Os.33788.1.S1_at--792--9751Chr01:42940685..42940709 (25 bp)
TAATACGCTGTGATTCGGACTTTAC
LOC_Os01g73540
Os.33788.1.S1_at--167--8831Chr01:42940675..42940699 (25 bp)
TGATTCGGACTTTACACGATCTCTT
LOC_Os01g73540
Os.33788.1.S1_at--961--451Chr01:42940657..42940681 (25 bp)
ATCTCTTGTAGTATTAATCGTCGGC
LOC_Os01g73540
Target Sequence 
CAGCAGCGAGGGTCACACGGCCAGCTCGCCGTGGCCGCGGCGACGACGGCGGCGGCCATGACCGGCCAATGCCACTGCTG
CTGCTGCTGCTGCTGCACCGGAGCGTCAGTGGCAGGAGGTGGCGGAGTGGGTGTGCAGGGCGGTGGCGGTGGTAGGGGAG
CTGGACCCAGCGACGGCGAAGGCGGCGATCGGGGTGGCCGGGCCGGCGCTGTCGGCGTTCGGGTTCCTGTTCATCGCCCG
GATCGTGATGTCGTGGTACCCGAGGCTCCCCGTGAGGGAGTTCCCCTACGTGGTGGCGTACGCGCCGACGGAGCCGCTCC
TCGCCGTGACGAGGAAGGTGATCCCGCCGCTCGGCGGCGTCGACGTCACGCCGGTGGTGTGGTTCGGCCTCGTCAGCTTC
GCCAGCGAGATCCTCGTCGGCCCACAGGGATTGCTCGTGCTCCTCTCTCAGCAAAAGCCTTAGCAAACTCTGTTTCGTTC
GTTCGTTTCCATGTGAAAAGTGAAGCAAATTAATACGCTGTGATTCGGACTTTACACGATCTCTTGTAGTATTAATCGTC
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis