Browse Element(s) Details


OsAffx.24031.1.S1_x_at

Description tigr:9629.m07289
TID=OsAffx.24031.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sugar transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7359011/11Sugar transporter family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73580Os.11387.1.S1_a_at11/111+42953169..42957287Beta-fructofuranosidase, insoluble isoenzyme 4 precursor, putative, expressed
LOC_Os01g73590OsAffx.24031.1.S1_x_at11/111+42962576..42964753Sugar transporter family protein
LOC_Os01g73604OsAffx.2471.2.S1_at11/111+42965704..42971792Sm protein
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24031.1.S1_x_at--811--8291Chr01:42963799..42963823 (25 bp)
GGCTTAGGCCTCACCGTCATCGGTG
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--121--8411Chr01:42963691..42963715 (25 bp)
GGCCCCATCACCTGGGTGTACAGCT
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--568--8631Chr01:42963679..42963703 (25 bp)
TGGGTGTACAGCTCCGAGATCTTCC
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--349--8371Chr01:42963523..42963547 (25 bp)
GGCGTCGCCTCGCTTGCTTGGCTCT
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--135--10731Chr01:42963510..42963534 (25 bp)
TTGCTTGGCTCTTCTTCTTCACCTA
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--960--9951Chr01:42963487..42963511 (25 bp)
TACCTCCCGGAGACTCGTGGACGCA
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--297--2011Chr01:42963475..42963499 (25 bp)
ACTCGTGGACGCACGCTCGAGCAGA
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--192--1531Chr01:42963456..42963480 (25 bp)
AGCAGATGGGCGAGCTCTTCCGCAT
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--450--5911Chr01:42963445..42963469 (25 bp)
GAGCTCTTCCGCATCCACAACATGG
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--336--4991Chr01:42963435..42963459 (25 bp)
GCATCCACAACATGGCCGGCGACGA
LOC_Os01g73590
OsAffx.24031.1.S1_x_at--927--971Chr01:42963375..42963399 (25 bp)
AGGAGGAGAAGATCACCAACTACGT
LOC_Os01g73590
Target Sequence 
GGCTTAGGCCTCACCGTCATCGGTGAGGACGCCACCGGCGGCGGCTGGGCCATCGCCGTGTCCATCGCCTCCATCCTCGC
CTTCGTCGCCTTCTTCTCCATCGGCCTCGGCCCCATCACCTGGGTGTACAGCTCCGAGATCTTCCCGCTCCACCTCCGCG
CCCTCGGCTGCGCTCTCGGCGTCGGCCTCAACCGCGTCACCAGCGGCGTCATCTCCATGACCTTCCTCTCCCTCTCCAAG
GCCATCACCATCGGCGGCAGCTTCTTCCTCTACGCCGGCGTCGCCTCGCTTGCTTGGCTCTTCTTCTTCACCTACCTCCC
GGAGACTCGTGGACGCACGCTCGAGCAGATGGGCGAGCTCTTCCGCATCCACAACATGGCCGGCGACGACGACTCTGCCG
CCACTCGACCGCCGTCGCCGGAGGAGGAGGAGAAGATCACCAACTACGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24031.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis