Browse Element(s) Details


Os.8747.1.S2_x_at

Description gb:AK066528.1
DB_XREF= gi:32976546
TID=Os.8747.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAb0022I16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071I23, full insert sequence.
FL= gb:AK066528.1 gb:AK073498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g079745/11Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os01g736401/11expressed protein
LOC_Os08g097901/11hypothetical protein
LOC_Os05g480301/11Anti-silencing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006139biological_processnucleobase, nucleoside, nucleotide and nucleic acid metabolism
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8747.1.S2_x_at--251--9316Chr11:16014950..16015074 (25 bp)
TCCCCATCGGAGTTGACATCATCAT
NONE
Os.8747.1.S2_x_at--747--5671Chr10:5481851..5481875 (25 bp)
GACATCATCATCACTCAATGAAGGA
NONE
Os.8747.1.S2_x_at--647--11911Chr10:5482027..5482051 (25 bp)
AGTTTGTGAAGGCTCCGAGGTCCAC
NONE
Os.8747.1.S2_x_at--1154--29310Chr10:5482035..5482059 (25 bp)
AAGGCTCCGAGGTCCACTTCATTGA
NONE
Os.8747.1.S2_x_at--1012--813Chr10:5482067..5482091 (25 bp)
ATGGATCTTTTTCTTCTTCATCGTC
NONE
Os.8747.1.S2_x_at--422--8674Chr10:5482158..5482182 (25 bp)
TGTGTCCTAGTGTTTAGTTTACCCT
NONE
Os.8747.1.S2_x_at--126--7877Chr10:5482250..5482274 (25 bp)
GGTATTAGAGTACTTTCCCCTCTCT
NONE
Os.8747.1.S2_x_at--269--6713Chr10:5482278..5482302 (25 bp)
GTTCCCCTCTCTTGTGTACATATAT
NONE
Os.8747.1.S2_x_at--437--3611Chr10:5482350..5482374 (25 bp)
CTTACCTTGAGAGAAACTTTGTCCA
NONE
Os.8747.1.S2_x_at--267--1231Chr10:5482365..5482389 (25 bp)
ACTTTGTCCAAACAGAAGGGACGCA
NONE
Os.8747.1.S2_x_at--516--1071Chr10:5482381..5482405 (25 bp)
AGGGACGCACAAAAGATTCTTGAAT
NONE
Target Sequence 
TCCCCATCGGAGTTGACATCATCATCACTCAATGAAGGANTNNNNNANNATNNNNNNNNNNNCNTNATCANATCTANGAA
GGTCCGAAGAACAGTTTGTGAAGGGCNTTCCATCATNGTCAANCNTCTCTNAATCAATGAAGAGCCGAAGAACGAGTNGT
GAAGGCTTCAAGGTACCGAGGGCCGAAGANCAGTTTGTGAAGGCTCCGAGGTCCACTTCATTGAAGAGGAGATGGATCTT
TTTCTTCTTCATCGTCATCATCCAAGAATTGGCACACTTTGACGACATCATCAAGACTTTGGAGATAGGCTAATATTTAG
TTTGTGTCCTAGTGTTTAGTTTACCCTTCAAATGCAATGTTATTGCATACACATTGCATTTGAGTGGGGGTGTTAAGTGT
AGTAGTATGTCAAGGGTATTAGAGTACTTTCCCCTCTCTTGTGTTCCCCTCTCTTGTGTACATATATGNCATTTAGGGCC
AAANTCAATACAAGNTTGAAATCCCNNAATTCTCTCTTACCTTGAGAGAAACTTTGTCCAAACAGAAGGGACGCACAAAA
GATTCTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8747.1.S2_x_at     

Putative homologies in rice

Putative homologies in arabidopsis