Browse Element(s) Details


Os.8747.2.S1_at

Description gb:AK068207.1
DB_XREF= gi:32978225
TID=Os.8747.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAb0022I16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147L15, full insert sequence.
FL= gb:AK068207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0797411/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8747.2.S1_at--1083--5312Chr08:2753830..2753854 (25 bp)
GAAGGGCTTTCCATCATTGTCAACA
NONE
Os.8747.2.S1_at--792--3672Chr08:2753836..2753859 (24 bp)
CTTTCCATCATTGTCAACATCTCTG
NONE
Os.8747.2.S1_at--648--6834Chr08:2754244..2754263 (20 bp)
GTGTTCCCCTCTCTGAAATTAACAG
NONE
Os.8747.2.S1_at--336--3131Chr07:4020572..4020596 (25 bp)
AATTAACAGTTACCTCACTCCGACG
LOC_Os07g07974
Os.8747.2.S1_at--1035--9951Chr07:4020582..4020606 (25 bp)
TACCTCACTCCGACGACGGTGGTGG
LOC_Os07g07974
Os.8747.2.S1_at--769--2971Chr07:4020608..4020632 (25 bp)
AATGGTGGTTCGTTGCCGGATTTGC
LOC_Os07g07974
Os.8747.2.S1_at--773--10551Chr07:4020719..4020743 (25 bp)
TTCTTCTCGCTGCTTTTTCCGACAG
LOC_Os07g07974
Os.8747.2.S1_at--185--3831Chr07:4020728..4020752 (25 bp)
CTGCTTTTTCCGACAGCGAGCCGAG
LOC_Os07g07974
Os.8747.2.S1_at--845--5631Chr07:4020739..4020763 (25 bp)
GACAGCGAGCCGAGGAGAAATCCTC
LOC_Os07g07974
Os.8747.2.S1_at--1109--6171Chr07:4020750..4020774 (25 bp)
GAGGAGAAATCCTCGCTCTTCTGCT
LOC_Os07g07974
Os.8747.2.S1_at--792--3691Chr07:4020775..4020799 (25 bp)
CTATGCAATTTTACGCAGTTGTCGC
LOC_Os07g07974
Target Sequence 
GAAGGGCTTTCCATCATTGTCAACATCTCTGAATCAATGAAGAGCCGAAGAACGAGTTGTGAAGGCTTCAAGGTACCGAG
GGCCGAAGAACAGTTTGTGAAGGCTCCGAGGTCCACTTCATTGAAGAGGAGATGGATCTTTTTCTTCTTCATCGTCATCA
TCCAAGAATTGGCACACTTTGACGACATCATCAAGACTTTGGAGATAGGCTAATATTTAGTTTGTGTCCTAGTGTTTAGT
TTACCCTTCAAATGCAATGTTATTGCATACACATTGCATTTGAGTGGGGGTGTTAAGTGTAGTAGTATGTCAAGGGTATT
AGAGTACTTTCCCCTCTCTTGTGTTCCCCTCTCTGAAATTAACAGTTACCTCACTCCGACGACGGTGGTGGTAATGGTGG
TTCGTTGCCGGATTTGCTTGGGGGTTTGGGTGCGGAGGAGCGACGACGGCGGCGGAGGTTTGGGTATGGTGTGTTCGTCG
TGGGGTGCGGGGATCTCGTCGGTTTCTTCTCGCTGCTTTTTCCGACAGCGAGCCGAGGAGAAATCCTCGCTCTTCTGCTC
TATGCAATTTTACGCAGTTGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8747.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis