Browse Element(s) Details


Os.27092.1.S1_at

Description gb:AK067073.1
DB_XREF= gi:32977091
TID=Os.27092.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27092 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093N14, full insert sequence.
FL= gb:AK066812.1 gb:AK067073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0800011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed
LOC_Os07g08010OsAffx.17740.1.S1_at2/117+4054637..4057367transposon protein, putative, Mutator sub-class
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27092.1.S1_at--1129--2851Chr07:4052231..4052255 (25 bp)
AAGTGCACATTCCAGGTTCTCCGAA
LOC_Os07g08000
Os.27092.1.S1_at--701--1011Chr07:4052244..4052268 (25 bp)
AGGTTCTCCGAAGCGACAGCAGCAA
LOC_Os07g08000
Os.27092.1.S1_at--399--2651Chr07:4052270..4052294 (25 bp)
AACCACACCGGAGACAGTTCTGATC
LOC_Os07g08000
Os.27092.1.S1_at--444--1231Chr07:4052285..4052309 (25 bp)
AGTTCTGATCCCAGCATTCTTGGCA
LOC_Os07g08000
Os.27092.1.S1_at--152--8251Chr07:4052306..4052330 (25 bp)
GGCACTGACAGTAATCCACTCATCA
LOC_Os07g08000
Os.27092.1.S1_at--542--2011Chr07:4052323..4052347 (25 bp)
ACTCATCACGAGCTCATCGGATTGG
LOC_Os07g08000
Os.27092.1.S1_at--176--6991Chr07:4052377..4052401 (25 bp)
GTACCGTCAGAGAGCCGAGGCACTG
LOC_Os07g08000
Os.27092.1.S1_at--313--3491Chr07:4052629..4052653 (25 bp)
CAGGCTGCTCTGTACAGTTTCAGTT
LOC_Os07g08000
Os.27092.1.S1_at--610--7831Chr07:4052658..4052682 (25 bp)
GGTAATATCCTCTTTTCGTCTTTGA
LOC_Os07g08000
Os.27092.1.S1_at--685--2471Chr07:4052701..4052725 (25 bp)
AACACTCCGTTGTTTGGCGAGAGAA
LOC_Os07g08000
Os.27092.1.S1_at--636--6011Chr07:4052719..4052743 (25 bp)
GAGAGAAGCTCCATTTTTGTGTATA
LOC_Os07g08000
Target Sequence 
AAGTGCACATTCCAGGTTCTCCGAAGCGACAGCAGCAAGAACCACACCGGAGACAGTTCTGATCCCAGCATTCTTGGCAC
TGACAGTAATCCACTCATCACGAGCTCATCGGATTGGATGAAGCAGAGGAGATTCGACACGACGTCGTACCGTCAGAGAG
CCGAGGCACTGGAAGGATTGCTGGAGTTCAGTGCACAGCTGCTGCAGCAGGAGAGGTTTGAGGAGCTGGGGATCTTGCTG
AAGCCATTTGGGCCAGGGAAGGCGTCTCCGAGAGAGACGGCCATATGGTTGTCAAAGAGCTTCAAAGGGACTGGATTGTG
ATTAATCAGAGTCCTGCAAATGCAAAAAAAAGAAAAAAAAAATCTGANCCTAGAATAATTTTGTGTCTTTGATTAGATTC
AGGCTGCTCTGTACAGTTTCAGTTTTGTGGTAATATCCTCTTTTCGTCTTTGATTTTCGCGAAATGTTTGAAACACTCCG
TTGTTTGGCGAGAGAAGCTCCATTTTTGTGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27092.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis