Browse Element(s) Details


Os.4954.1.S1_a_at

Description gb:AK060861.1
DB_XREF= gi:32970879
TID=Os.4954.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.4954 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013094G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G01, full insert sequence.
FL= gb:AK060861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0803011/11ribose 5-phosphate isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed
LOC_Os07g08010OsAffx.17740.1.S1_at2/117+4054637..4057367transposon protein, putative, Mutator sub-class
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4954.1.S1_a_at--738--5751Chr07:4066858..4066878 (21 bp)
GACGAGGTCGATCCAGACCTTAACC
LOC_Os07g08030
Os.4954.1.S1_a_at--222--5611Chr07:4066777..4066801 (25 bp)
GACAAGTTCATCGTTGTTGTTGACG
LOC_Os07g08030
Os.4954.1.S1_a_at--834--5611Chr07:4066751..4066775 (25 bp)
GACAAAGCTAGTTACCGGCTTAGGA
LOC_Os07g08030
Os.4954.1.S1_a_at--100--9991Chr07:4066716..4066740 (25 bp)
TAGCCATGCCTGTGGAGGTTGTGCA
LOC_Os07g08030
Os.4954.1.S1_a_at--807--7331Chr07:4066696..4066720 (25 bp)
GTGCAGTTCTGCTGGAAGTACAACC
LOC_Os07g08030
Os.4954.1.S1_a_at--1063--10411Chr07:4066564..4066588 (25 bp)
TTATACTTCAAGACGCCGATCAAGG
LOC_Os07g08030
Os.4954.1.S1_a_at--297--6411Chr07:4066517..4066541 (25 bp)
GATCTCAGCTTTGGAAGGCGTCGTT
LOC_Os07g08030
Os.4954.1.S1_a_at--134--10771Chr07:4066494..4066518 (25 bp)
TTGAGCATGGGCTGTTCCTGGACAT
LOC_Os07g08030
Os.4954.1.S1_a_at--856--5491Chr07:4066446..4066470 (25 bp)
GAACAGATGGCGTCAGTGTCAAAAC
LOC_Os07g08030
Os.4954.1.S1_a_at--903--6671Chr07:4066398..4066422 (25 bp)
GTTGCCGGTGTTGAATTTACGATTT
LOC_Os07g08030
Os.4954.1.S1_a_at--645--3111Chr07:4066306..4066330 (25 bp)
AATATATTTCCCCACTCTTTCATTG
LOC_Os07g08030
Target Sequence 
GACGAGGTCGATCCAGACCTTAACCTTGTGAAAGGGAGAGGTGGTGCCCTTCTCCGGGAGAAGATGGTTGAGGCAGCATC
AGACAAGTTCATCGTTGTTGTTGACGAGACAAAGCTAGTTACCGGCTTAGGAGGGAGTGGTCTAGCCATGCCTGTGGAGG
TTGTGCAGTTCTGCTGGAAGTACAACCAAGTGAGATTGCAGGATCTGTTTAACGATGAAGGATGCGAGGCGAAGCTGAGA
TTGGATGAAGGCGGCAAACCCTACGTTACCGACAACTCAAACTACATCGTTGATTTATACTTCAAGACGCCGATCAAGGA
TGCGTTGGCAGCAGGGAAGGAGATCTCAGCTTTGGAAGGCGTCGTTGAGCATGGGCTGTTCCTGGACATGGCGACTTCGG
TGATCATCGCTGGAACAGATGGCGTCAGTGTCAAAACAAAGTGAGTTTTGGGGTTTTGTTGTTGCCGGTGTTGAATTTAC
GATTTTTTGTTGGGATGTATAAGCTATTGGGGTGTAAAAGCAGGCAATAAGATGCTTCACTAATAATAATTGAATATATT
TCCCCACTCTTTCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4954.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis