Browse Element(s) Details


OsAffx.28340.4.S1_at

Description tigr:9635.m00756
TID=OsAffx.28340.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0808011/11expressed protein
LOC_Os07g080901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28340.4.S1_at--184--5391Chr07:4091699..4091723 (25 bp)
GAAGCACAAGCACAGGTTGCCTTGA
LOC_Os07g08080
OsAffx.28340.4.S1_at--1115--991Chr07:4091686..4091710 (25 bp)
AGGTTGCCTTGACGAAATCCATCCA
LOC_Os07g08080
OsAffx.28340.4.S1_at--1027--8931Chr07:4091677..4091701 (25 bp)
TGACGAAATCCATCCAACCAGACAC
LOC_Os07g08080
OsAffx.28340.4.S1_at--567--5191Chr07:4091629..4091653 (25 bp)
GCAATGTTGCCGGTAACAATGTTTT
LOC_Os07g08080
OsAffx.28340.4.S1_at--949--5391Chr07:4091582..4091606 (25 bp)
GAAGCTCCTACTCCGAGGCATGTGA
LOC_Os07g08080
OsAffx.28340.4.S1_at--990--4811Chr07:4091412..4091436 (25 bp)
GCTCTCTCATTTCCTGAAAGGAGTA
LOC_Os07g08080
OsAffx.28340.4.S1_at--875--6871Chr07:4091390..4091414 (25 bp)
GTATTCAATCATCACCAAGAGGGTT
LOC_Os07g08080
OsAffx.28340.4.S1_at--563--2091Chr07:4091362..4091386 (25 bp)
ACATCATCCTCGTCGTATTTCTTAT
LOC_Os07g08080
OsAffx.28340.4.S1_at--875--7911Chr07:4091332..4091356 (25 bp)
GGTTGATTCTGGCAACCACTGCCAC
LOC_Os07g08080
OsAffx.28340.4.S1_at--305--10092Chr07:4091295..4091319 (25 bp)
TAGGCACTCCGCCAAGGTGGTTGTC
LOC_Os07g08080
OsAffx.28340.4.S1_at--817--10711Chr07:4091266..4091290 (25 bp)
TTGCACTAGTCCCACAGGTTCTTGT
LOC_Os07g08080
Target Sequence 
GAAGCACAAGCACAGGTTGCCTTGACGAAATCCATCCAACCAGACACCAGCAACGAGGAAATGACATCAGGCAATGTTGC
CGGTAACAATGTTTTACTGCCATTATCCAACAGAACTGAAGCTCCTACTCCGAGGCATGTGATTGTCACTATTTCGCTCG
ATGCTGGCCAGAACACAATGGTTGACGACAATGGTGTTAGACAGGGATTAACAGACGAGGAATCCGATACTAAAACGAAG
CTGTTGGAAAGAGGTGTTCTCACGGCTGCCTCTGCTACTGCAGCAATGCTCTCTCATTTCCTGAAAGGAGTATTCAATCA
TCACCAAGAGGGTTACTACATCATCCTCGTCGTATTTCTTATGACGGGGTTGATTCTGGCAACCACTGCCACATGGCTCG
CCCGTAGGCACTCCGCCAAGGTGGTTGTCCTTCTTGCACTAGTCCCACAGGTTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28340.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis