Browse Element(s) Details


OsAffx.28340.1.S1_at

Description tigr:9635.m00757
TID=OsAffx.28340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0809011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28340.1.S1_at--131--4511Chr07:4099597..4099621 (25 bp)
GCCGTCATGGCTATCGACCACATCT
LOC_Os07g08090
OsAffx.28340.1.S1_at--821--851Chr07:4099591..4099615 (25 bp)
ATGGCTATCGACCACATCTGCGGTT
LOC_Os07g08090
OsAffx.28340.1.S1_at--1013--511Chr07:4099585..4099609 (25 bp)
ATCGACCACATCTGCGGTTGCGCGG
LOC_Os07g08090
OsAffx.28340.1.S1_at--964--1371Chr07:4099476..4099500 (25 bp)
AGAGCGCTATGCGCGCGCTGCACGT
LOC_Os07g08090
OsAffx.28340.1.S1_at--381--3351Chr07:4099456..4099480 (25 bp)
CACGTCGTGGCGACGCACACGGCGA
LOC_Os07g08090
OsAffx.28340.1.S1_at--389--5851Chr07:4099331..4099355 (25 bp)
GACCACGAGACGGTCCAGGAGCTGC
LOC_Os07g08090
OsAffx.28340.1.S1_at--460--4251Chr07:4099269..4099293 (25 bp)
CCGTGGGTGCCCTAGCGCTGGTATC
LOC_Os07g08090
OsAffx.28340.1.S1_at--557--7291Chr07:4099263..4099287 (25 bp)
GTGCCCTAGCGCTGGTATCCCCATG
LOC_Os07g08090
OsAffx.28340.1.S1_at--631--10152Chr07:4099248..4099272 (25 bp)
TATCCCCATGCCCTGCGAGTGTGAG
LOC_Os07g08090
OsAffx.28340.1.S1_at--273--9313Chr07:4099246..4099270 (25 bp)
TCCCCATGCCCTGCGAGTGTGAGAG
LOC_Os07g08090
OsAffx.28340.1.S1_at--445--3532Chr07:4099242..4099266 (25 bp)
CATGCCCTGCGAGTGTGAGAGCAGA
LOC_Os07g08090
Target Sequence 
GCCGTCATGGCTATCGACCACATCTGCGGTTGCGCGGAGGGGCACTTGGCACTGGTGGCGCACCCGACGGGGCTCGCGGC
GGTGGCGTGCGCGGCGACGCGGCTGTCCACCGCGGGCACCGAGAGCGCTATGCGCGCGCTGCACGTCGTGGCGACGCACA
CGGCGACGTCGGCGGTGCTGCAGGAGATGCTGGCCGTCGGCGTGGGGGCGAGGCTGTTCTTCCTGGTGCAAGTCGGCGCC
TCCGGCAAGCGGACGAGGGCGAGGTGGACCACGAGACGGTCCAGGAGCTGCCGTCGCCGGCCGCACCATCCTTCGGCCGC
GCGCGCCGCCGTGGGTGCCCTAGCGCTGGTATCCCCATGCCCTGCGAGTGTGAGAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis