Browse Element(s) Details


OsAffx.28338.1.S1_x_at

Description tigr:9635.m00752
TID=OsAffx.28338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0804011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed
LOC_Os07g08010OsAffx.17740.1.S1_at2/117+4054637..4057367transposon protein, putative, Mutator sub-class
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28338.1.S1_x_at--456--4791Chr07:4069646..4069670 (25 bp)
GCTCCGCGAGAGCACCACTGGACAA
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--1029--4611Chr07:4069641..4069665 (25 bp)
GCGAGAGCACCACTGGACAACCGGA
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--181--5951Chr07:4069637..4069661 (25 bp)
GAGCACCACTGGACAACCGGACGAG
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--387--3251Chr07:4069587..4069611 (25 bp)
CAACCTGGTTCTGTCGTCGCCGATG
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--429--3911Chr07:4069583..4069607 (25 bp)
CTGGTTCTGTCGTCGCCGATGAAAC
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--484--9332Chr07:4069571..4069595 (25 bp)
TCGCCGATGAAACCGCGCCGGAGCT
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--889--8073Chr07:4069552..4069576 (25 bp)
GGAGCTGCTACGTCCGAGGGCGCCG
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--313--494Chr11:971774..971846 (25 bp)
ATCTGGCGAGGCGACCGGATCTGGC
NONE
OsAffx.28338.1.S1_x_at--948--8511Chr07:4069282..4069306 (25 bp)
TGGAGCCGAGGGAGATGGGCCCGCC
LOC_Os07g08040
OsAffx.28338.1.S1_x_at--215--83112Chr12:23623439..23623460 (22 bp)
GGCTTTGCCGGCGACGAGCTCCAGT
NONE
OsAffx.28338.1.S1_x_at--624--1871Chr07:4069221..4069245 (25 bp)
ACGAGCTCCAGTGGCGGCGAAGCAG
LOC_Os07g08040
Target Sequence 
GCTCCGCGAGAGCACCACTGGACAACCGGACGAGCCGCCGCCAACCGGAGAGCCGCCGCCAACCTGGTTCTGTCGTCGCC
GATGAAACCGCGCCGGAGCTGCTACGTCCGAGGGCGCCGGCGTCGACCAAGACCGTCGCCGGCCGCGCCGAGACCCGCCG
CCACGCCGCCGTCGTCACCCCGGCCAGATCTGGCGAGGCGACCGGATCTGGCGACGCCCTCGACGGAGCCGCGCAGAGCC
CCACCGCCGCGCCGCCATCGCCGCAGGGAGCTCCACCACCACGCCGTCGCCGCGACCTCGCTGTCCCGCCGCCGCGACCT
CGTCGTCCTGCCGCCATTGTCGCCACACCCGCGCCGGGGCGAGATGGAGCCGAGGGAGATGGGCCCGCCGCCGCCATCCC
AGCGCGTCGCCCGGCTTTGCCGGCGACGAGCTCCAGTGGCGGCGAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28338.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis