Browse Element(s) Details


Os.52022.1.S1_at

Description gb:AK064551.1
DB_XREF= gi:32974569
TID=Os.52022.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52022 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B12, full insert sequence.
FL= gb:AK064551.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0805011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed
LOC_Os07g08010OsAffx.17740.1.S1_at2/117+4054637..4057367transposon protein, putative, Mutator sub-class
LOC_Os07g08030Os.4954.1.S1_a_at11/117+4066303..4068434ribose 5-phosphate isomerase, putative, expressed
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52022.1.S1_at--58--3311Chr07:4079766..4079790 (25 bp)
CACACATGTATGTCGATTGACCGTT
LOC_Os07g08050
Os.52022.1.S1_at--1115--10731Chr07:4079782..4079806 (25 bp)
TTGACCGTTTTGACTTTTAAGGCAT
LOC_Os07g08050
Os.52022.1.S1_at--590--10331Chr07:4079807..4079831 (25 bp)
TTTCATGTGCTTTATTGTTCTATTA
LOC_Os07g08050
Os.52022.1.S1_at--498--9751Chr07:4079830..4079854 (25 bp)
TAATAGCTGTTCTCAGCCTTTCTTT
LOC_Os07g08050
Os.52022.1.S1_at--992--3371Chr07:4079843..4079867 (25 bp)
CAGCCTTTCTTTCTTCAAAGCAGCA
LOC_Os07g08050
Os.52022.1.S1_at--43--5071Chr07:4079862..4079886 (25 bp)
GCAGCATACTGATTGTGCATTGTTT
LOC_Os07g08050
Os.52022.1.S1_at--674--5911Chr07:4079995..4080019 (25 bp)
GATCTTTGTGGTATTTGTTACCCCT
LOC_Os07g08050
Os.52022.1.S1_at--128--10211Chr07:4080006..4080030 (25 bp)
TATTTGTTACCCCTAGATTCTCTTG
LOC_Os07g08050
Os.52022.1.S1_at--309--4191Chr07:4080016..4080040 (25 bp)
CCCTAGATTCTCTTGTCATGCTAAT
LOC_Os07g08050
Os.52022.1.S1_at--721--5331Chr07:4080048..4080072 (25 bp)
GAAGTAAGGCTTCCTATTATTGTAT
LOC_Os07g08050
Os.52022.1.S1_at--217--3071Chr07:4080096..4080120 (25 bp)
AATCTATACAGCATGCCTTTTGTTC
LOC_Os07g08050
Target Sequence 
CACACATGTATGTCGATTGACCGTTTTGACTTTTAAGGCATTTTCATGTGCTTTATTGTTCTATTAATAGCTGTTCTCAG
CCTTTCTTTCTTCAAAGCAGCATACTGATTGTGCATTGTTTGTGTATGTAGGGAGTGGGTGATGATTTAGATGCTACAAG
GGATGATCTTTCTAAGGCACTAATGGTATGAATATAGACATATAATATTTCGCTGATTTGAGAGTGTTTGATCTTTGTGG
TATTTGTTACCCCTAGATTCTCTTGTCATGCTAATTAATGATGAAGTAAGGCTTCCTATTATTGTATTTTGTTGGCTAAC
AATCTGTTTAAATCTATACAGCATGCCTTTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52022.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis