Browse Element(s) Details


Os.8747.1.S1_at

Description gb:AK073498.1
DB_XREF= gi:32983521
TID=Os.8747.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8747 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNAb0022I16.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045C23, full insert sequence.
FL= gb:AK066528.1 gb:AK073498.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g079744/11Tesmin/TSO1-like CXC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07990Os.8859.1.S1_s_at11/117+4027661..4029140Leucine Rich Repeat family protein, expressed
LOC_Os07g08000Os.27092.1.S1_at11/117+4048081..4052823Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009934biological_processregulation of meristem organization
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8747.1.S1_at--864--3811Chr10:5481230..5481254 (25 bp)
CTGCCTGTCGTAACCCCTTGCGTGG
NONE
Os.8747.1.S1_at--756--7172Chr11:28407992..28408026 (24 bp)
GTCGTAACCCCTTGCGTGGCGCCGG
NONE
Os.8747.1.S1_at--410--2791Chr10:5481403..5481427 (25 bp)
AAGAGTTGCTCCCAGCTTGTGGTCA
NONE
Os.8747.1.S1_at--65--10731Chr10:5481408..5481432 (25 bp)
TTGCTCCCAGCTTGTGGTCATGCTT
NONE
Os.8747.1.S1_at--436--4351Chr10:5481414..5481438 (25 bp)
CCAGCTTGTGGTCATGCTTTTGCCT
NONE
Os.8747.1.S1_at--1023--10473Chr10:5481454..5481478 (25 bp)
TTACTGAAAGTATTCGTGGTCTCTC
NONE
Os.8747.1.S1_at--572--5573Chr10:5481459..5481483 (25 bp)
GAAAGTATTCGTGGTCTCTCATTAC
NONE
Os.8747.1.S1_at--723--6873Chr10:5481463..5481487 (25 bp)
GTATTCGTGGTCTCTCATTACCATC
NONE
Os.8747.1.S1_at--171--7513Chr10:5481469..5481493 (25 bp)
GTGGTCTCTCATTACCATCTCCTGT
NONE
Os.8747.1.S1_at--608--251Chr10:5481667..5481691 (25 bp)
ATATCTATTAGTATCATTGTGTCAT
NONE
Os.8747.1.S1_at--414--10052Chr10:5481675..5481699 (25 bp)
TAGTATCATTGTGTCATTTACTAGT
NONE
Target Sequence 
CTGCCTGTCGTAACCCCTTGCGTGGCGCCGGTCCTCTCCGCCAATCAGGCCCTGTCACCCGTTTGTAGCAGAGCAAGCAG
CTGCCGCTGCCGGCAGATCCTTCAGTCTTGGCTATTGCCTGTAAACTGCACAAGTCCATATGCTGCACACAAGGTGCTCG
ACAAAATGCTTCAAAGAGTTGCTCCCAGCTTGTGGTCATGCTTTTGCCTTTCCAATTTGGTGCTTTACTGAAAGTATTCG
TGGTCTCTCATTACCATCTCCTGTCCATCTTCATCAGCTACTTCTCTCTGCTACCAAATTGGATAGAATTAATCAGTTAA
TATGCAATTCCTTGGCAGCCACAATTATGTCTTTTGCTAGCATATCAATGTCCTCTACAAATTGATTTCCTTTGTTTCCT
ATGATCCTATCTAGTTTATCCATTAAAGCCTTGCTGCATATCTATTAGTATCATTGTGTCATTTACTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis