Browse Element(s) Details


Os.23227.1.S1_at

Description gb:AK067194.1
DB_XREF= gi:32977212
TID=Os.23227.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097N09, full insert sequence.
FL= gb:AK067194.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0795011/11Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein
LOC_Os07g07974Os.10382.1.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.2.S1_at11/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S2_x_at5/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_x_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.8747.1.S1_at4/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.50851.1.S1_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os07g07974Os.19069.1.S2_x_at1/117+4018589..4025726Tesmin/TSO1-like CXC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23227.1.S1_at--109--2411Chr07:3990893..3990917 (25 bp)
AAACATGGGATATTTCAGCTCTAGA
LOC_Os07g07950
Os.23227.1.S1_at--780--1051Chr07:3990864..3990888 (25 bp)
AGGTGGAAGAGCTACTACCCCATTC
LOC_Os07g07950
Os.23227.1.S1_at--1002--2091Chr07:3990649..3990673 (25 bp)
ACATGCAGGGTTCAAGAGTCAGCTC
LOC_Os07g07950
Os.23227.1.S1_at--746--6091Chr07:3990634..3990658 (25 bp)
GAGTCAGCTCATTAGGTGATCAGAT
LOC_Os07g07950
Os.23227.1.S1_at--159--8551Chr07:3990310..3990334 (25 bp)
TGGAGATGTATCAGCCCATGCCACT
LOC_Os07g07950
Os.23227.1.S1_at--216--9811Chr07:3990286..3990310 (25 bp)
TAACTATACACTCACTCCAACTTTA
LOC_Os07g07950
Os.23227.1.S1_at--170--2051Chr07:3990267..3990291 (25 bp)
ACTTTAGCTTCTTAGTTTCTCTGAG
LOC_Os07g07950
Os.23227.1.S1_at--117--8911Chr07:3990246..3990270 (25 bp)
TGAGCAAGCTAATGCTTCCTTTTTT
LOC_Os07g07950
Os.23227.1.S1_at--983--1711Chr07:3990140..3990164 (25 bp)
ACCAGCTAGTGTATCCCATGCAAGT
LOC_Os07g07950
Os.23227.1.S1_at--1--5631Chr07:3990079..3990103 (25 bp)
GACAAACTGTTCCTAGGCTGAGGGA
LOC_Os07g07950
Os.23227.1.S1_at--543--5391Chr07:3990035..3990059 (25 bp)
GAAGCTTGCACAGTTACAATCATGT
LOC_Os07g07950
Target Sequence 
AAACATGGGATATTTCAGCTCTAGAATTGAGGTGGAAGAGCTACTACCCCATTCTCAGAGCTACAGAGAAATAAACTTTT
ACTGATTTTGAGTTACCAACATGTTGTAAGATTAGGGTACTGGCCAAAAATACAAACATGCAGGGTTCAAGAGTCAGCTC
ATTAGGTGATCAGATATACTCAAGCAAGATGTGCAAATACTAACTTAAAGGNNNNNNNNNNANTTTNNNNGNNANNATTA
NNTCAAATGGAGATGTATCAGCCCATGCCACTAACTATACACTCACTCCAACTTTAGCTTCTTAGTTTCTCTGAGCAAGC
TAATGCTTCCTTTTTTTTTCTTTTTCTTTTTATCTGCTTAGAGTATTAATAAACACCAATATATTATTTTCCCCTTCCCT
TTGGAAGCTTTGTAAAACCAGCTAGTGTATCCCATGCAAGTTGTGGAATTATTGTAAAACATTATACTTAGCTTTAGGAC
AAACTGTTCCTAGGCTGAGGGAGGAATGATGAGACATGTGAGAAGCTTGCACAGTTACAATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis