Browse Element(s) Details


Os.7242.1.S1_at

Description gb:AK073569.1
DB_XREF= gi:32983592
TID=Os.7242.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.7242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-121-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042C03, full insert sequence.
FL= gb:AK073569.1 gb:AK104966.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0793011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7242.1.S1_at--103--3971Chr07:3978819..3978843 (25 bp)
CGGAGTGCCTGTGCGTCGCGCTCAA
LOC_Os07g07930
Os.7242.1.S1_at--809--4511Chr07:3978922..3978946 (25 bp)
GCCGCCGGTCAGCAACTGCAAGAGT
LOC_Os07g07930
Os.7242.1.S1_at--1013--2651Chr07:3979243..3979267 (25 bp)
AAGCCTATCACCGTCTGTATCAATC
LOC_Os07g07930
Os.7242.1.S1_at--153--371Chr07:3979261..3979285 (25 bp)
ATCAATCTTGATCGGTGCACGCATT
LOC_Os07g07930
Os.7242.1.S1_at--385--7771Chr07:3979274..3979298 (25 bp)
GGTGCACGCATTTGAGGATTTCGAT
LOC_Os07g07930
Os.7242.1.S1_at--816--5091Chr07:3979313..3979337 (25 bp)
GCACGCGTGCGTGTAGGAATTCGTT
LOC_Os07g07930
Os.7242.1.S1_at--1134--1911Chr07:3979338..3979362 (25 bp)
ACGGATTTGAGCTGTTCTTCCTCCA
LOC_Os07g07930
Os.7242.1.S1_at--1103--10651Chr07:3979355..3979379 (25 bp)
TTCCTCCATTGGTTTATGCTACTGC
LOC_Os07g07930
Os.7242.1.S1_at--742--10251Chr07:3979388..3979412 (25 bp)
TTTGTGCCACGATCAGAGGAGCTTG
LOC_Os07g07930
Os.7242.1.S1_at--968--6171Chr07:3979403..3979427 (25 bp)
GAGGAGCTTGTTTGATTATCTTTTT
LOC_Os07g07930
Os.7242.1.S1_at--711--6591Chr07:3979446..3979470 (25 bp)
GATTGATTCATCACTTCCATTAATT
LOC_Os07g07930
Target Sequence 
CGGAGTGCCTGTGCGTCGCGCTCAACGCCGACACGGNGGCNGCTCGGCCTCAGCATCAACCGCACCCGCGCGCTCGGCCT
CCCCGACGCCTGCAAGGTCCAGACGCCGCCGGTCAGCAACTGCAAGAGTNGGCGCTGCTGCTCCTCCTGCGGGNACAGAC
GCCGACGACTCCGGCGGGGANCAGGGTNCGAAGGCGACGCCGGCGNACGCCCGTGGGCTCCGGCNGTCGCGCCGCTCCGT
GTCTCGCCGGTGGGGATCCTCGCCGGCATCGTCGTCGCCGCCGTCTACGCCGTCTCCGCCGTGTGAGCTCGACGTCGACG
ACGAACCCGGCAAGCCTATCACCGTCTGTATCAATCTTGATCGGTGCACGCATTTGAGGATTTCGATGTGATGTGAGCAT
GGCACGCGTGCGTGTAGGAATTCGTTACGGATTTGAGCTGTTCTTCCTCCATTGGTTTATGCTACTGCTGCTCCCATTTG
TGCCACGATCAGAGGAGCTTGTTTGATTATCTTTTTATTATTATTATTATCTAGGATTGATTCATCACTTCCATTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7242.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis