Browse Element(s) Details


Os.9544.1.A1_at

Description gb:AU085735
DB_XREF= gi:7332389
DB_XREF=AU085735
CLONE=C52209
TID=Os.9544.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9544 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566713.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0792011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07870OsAffx.5247.1.S1_at11/117+3949100..3949881Protease inhibitor/seed storage/LTP family protein
LOC_Os07g07880Os.47739.1.S1_at11/117+3951283..3953194expressed protein
LOC_Os07g07890OsAffx.16145.1.S1_s_at11/117+3955666..3955881hypothetical protein
LOC_Os07g07900Os.9276.1.S1_s_at11/117+3956280..3958938expressed protein
LOC_Os07g07900Os.52184.1.S1_at10/117+3956280..3958938expressed protein
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9544.1.A1_at--762--971Chr07:3975382..3975406 (25 bp)
AGGAGTACCCGTTGCAGTTTCTCCG
LOC_Os07g07920
Os.9544.1.A1_at--139--6671Chr07:3975392..3975416 (25 bp)
GTTGCAGTTTCTCCGGCCATGCCAC
LOC_Os07g07920
Os.9544.1.A1_at--698--3471Chr07:3975646..3975670 (25 bp)
CAGGTGGTGCCCAGCTCTGCACGGA
LOC_Os07g07920
Os.9544.1.A1_at--269--591Chr07:3975683..3975707 (25 bp)
ATGCCGGTTTTCCTGCGTTTCTGCT
LOC_Os07g07920
Os.9544.1.A1_at--841--3711Chr07:3975712..3975736 (25 bp)
CTAGCTGCCATGCTGTTCTGAAAGC
LOC_Os07g07920
Os.9544.1.A1_at--456--9611Chr07:3975746..3975770 (25 bp)
TCATCATCAGATTATTCATTTGGCT
LOC_Os07g07920
Os.9544.1.A1_at--245--10731Chr07:3975812..3975836 (25 bp)
TTGCTATAATTTTTGTGGCGTGTTT
LOC_Os07g07920
Os.9544.1.A1_at--277--10411Chr07:3975822..3975846 (25 bp)
TTTTGTGGCGTGTTTGAGTGTATCT
LOC_Os07g07920
Os.9544.1.A1_at--928--10251Chr07:3975834..3975858 (25 bp)
TTTGAGTGTATCTGTGTATGTGCTG
LOC_Os07g07920
Os.9544.1.A1_at--914--1951Chr07:3975934..3975958 (25 bp)
ACTGAAATTCCATTCTTTTGTGGGA
LOC_Os07g07920
Os.9544.1.A1_at--1116--9551Chr07:3975947..3975971 (25 bp)
TCTTTTGTGGGAAGTCATGAGCTGA
LOC_Os07g07920
Target Sequence 
AGGAGTACCCGTTGCAGTTTCTCCGGCCATGCCACCACTGCCGCCAAGTCCNCCGGAGTCGACGGCCGGTGCCGGATCGC
CGACGGCGACGGCCACGCCGCCGGCGACGAGCCAGACGCAGACGAGGCCGCAGGTGGTGCCCAGCTCTGCACGGAGGGTC
GCCACCNATGCCGGTTTTCCTGCGTTTCTGCTGCTGCTAGCTGCCATGCTGTTCTGAAAGCCTCNACTTCTCATCATCAG
ATTATTCATTTGGCTGTTGGNTGATTGACCNATCGATTAAATTAGTTTGTGTTATTTTGCTATAATTTTTGTGGCGTGTT
TGAGTGTATCTGTGTATGTGCTGTTGTTTTGATTTGTATAGGAGAATTTGTGTNCGGATTGGTGCCNTTGTGTACCNGTG
GCTTGGATTATTGGTTGTACTGAAATTCCATTCTTTTGTGGGAAGTCATGAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9544.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis